multi_domain.template.cc
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26 // Templated multi-domain functions
27 
28 // Include guards to prevent multiple inclusion of the header
29 #ifndef OOMPH_MULTI_DOMAIN_CC
30 #define OOMPH_MULTI_DOMAIN_CC
31 
32 // Config header generated by autoconfig
33 #ifdef HAVE_CONFIG_H
34 #include <oomph-lib-config.h>
35 #endif
36 
37 // Oomph-lib headers
38 #include "geom_objects.h"
39 #include "problem.h"
40 #include "shape.h"
41 
42 #include "mesh.h"
44 #include "algebraic_elements.h"
46 #include "Qelements.h"
48 #include "multi_domain.h"
50 
51 // Needed to check if elements have nonuniformly spaced nodes
52 #include "refineable_elements.h"
53 #include "Qspectral_elements.h"
54 
55 namespace oomph
56 {
57  /// / Templated helper functions for multi-domain methods using locate_zeta
58 
59 
60  //============================================================================
61  /// Identify the \c FaceElements (stored in the mesh pointed to by
62  /// \c face_mesh_pt) that are adjacent to the bulk elements next to the
63  /// \c boundary_in_bulk_mesh -th boundary of the mesh pointed to by
64  /// \c bulk_mesh_pt. The \c FaceElements must be derived
65  /// from the \c ElementWithExternalElement base class and the adjacent
66  /// bulk elements are stored as their external elements.
67  ///
68  /// This is the vector-based version which deals with multiple bulk
69  /// mesh boundaries at the same time.
70  //============================================================================
71  template<class BULK_ELEMENT, unsigned DIM>
73  Problem* problem_pt,
74  Vector<unsigned>& boundary_in_bulk_mesh,
75  Mesh* const& bulk_mesh_pt,
76  Vector<Mesh*>& face_mesh_pt,
77  const unsigned& interaction)
78  {
79  unsigned n_mesh = boundary_in_bulk_mesh.size();
80 
81 #ifdef PARANOID
82  // Check sizes match
83  if (boundary_in_bulk_mesh.size() != face_mesh_pt.size())
84  {
85  std::ostringstream error_message;
86  error_message << "Sizes of vector of boundary ids in bulk mesh ("
87  << boundary_in_bulk_mesh.size()
88  << ") and vector of pointers\n"
89  << "to FaceElements (" << face_mesh_pt.size()
90  << " doesn't match.\n";
91  throw OomphLibError(
92  error_message.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
93  }
94 #endif
95 
96  // Create face meshes adjacent to the bulk mesh's b-th boundary.
97  // Each face mesh consists of FaceElements that may also be
98  // interpreted as GeomObjects
99  Vector<Mesh*> bulk_face_mesh_pt(n_mesh);
100 
101  // Loop over all meshes
102  for (unsigned i_mesh = 0; i_mesh < n_mesh; i_mesh++)
103  {
104  bulk_face_mesh_pt[i_mesh] = new Mesh;
105  bulk_mesh_pt
106  ->template build_face_mesh<BULK_ELEMENT, FaceElementAsGeomObject>(
107  boundary_in_bulk_mesh[i_mesh], bulk_face_mesh_pt[i_mesh]);
108 
109  // Loop over these new face elements and tell them the boundary number
110  // from the bulk mesh -- this is required to they can
111  // get access to the boundary coordinates!
112  unsigned n_face_element = bulk_face_mesh_pt[i_mesh]->nelement();
113  for (unsigned e = 0; e < n_face_element; e++)
114  {
115  // Cast the element pointer to the correct thing!
118  bulk_face_mesh_pt[i_mesh]->element_pt(e));
119 
120  // Set bulk boundary number
121  el_pt->set_boundary_number_in_bulk_mesh(boundary_in_bulk_mesh[i_mesh]);
122 
123  // Doc?
124  if (Doc_boundary_coordinate_file.is_open())
125  {
126  Vector<double> s(DIM - 1);
127  Vector<double> zeta(DIM - 1);
128  Vector<double> x(DIM);
129  unsigned n_plot = 5;
131 
132  // Loop over plot points
133  unsigned num_plot_points = el_pt->nplot_points(n_plot);
134  for (unsigned iplot = 0; iplot < num_plot_points; iplot++)
135  {
136  // Get local coordinates of plot point
137  el_pt->get_s_plot(iplot, n_plot, s);
138  el_pt->interpolated_zeta(s, zeta);
139  el_pt->interpolated_x(s, x);
140  for (unsigned i = 0; i < DIM; i++)
141  {
142  Doc_boundary_coordinate_file << x[i] << " ";
143  }
144  for (unsigned i = 0; i < DIM - 1; i++)
145  {
146  Doc_boundary_coordinate_file << zeta[i] << " ";
147  }
148  Doc_boundary_coordinate_file << std::endl;
149  }
151  n_plot);
152  }
153  }
154 
155  // Now sort the elements based on the boundary coordinates.
156  // This may allow a faster implementation of the locate_zeta
157  // function for the MeshAsGeomObject representation of this
158  // mesh, but also creates a unique ordering of the elements
159  std::sort(bulk_face_mesh_pt[i_mesh]->element_pt().begin(),
160  bulk_face_mesh_pt[i_mesh]->element_pt().end(),
162  } // end of loop over meshes
163 
164 
165  // Setup the interactions for this problem using the surface mesh
166  // on the fluid mesh. The interaction parameter in this instance is
167  // given by the "face" parameter.
169  BULK_ELEMENT,
171  problem_pt, face_mesh_pt, bulk_mesh_pt, bulk_face_mesh_pt, interaction);
172 
173 
174  // Loop over all meshes to clean up
175  for (unsigned i_mesh = 0; i_mesh < n_mesh; i_mesh++)
176  {
177  unsigned n_face_element = bulk_face_mesh_pt[i_mesh]->nelement();
178 
179  // The MeshAsGeomObject has already been deleted (in set_external_storage)
180 
181  // Must be careful with the FaceMesh, because we cannot delete the nodes
182  // Loop over the elements backwards (paranoid!) and delete them
183  for (unsigned e = n_face_element; e > 0; e--)
184  {
185  delete bulk_face_mesh_pt[i_mesh]->element_pt(e - 1);
186  bulk_face_mesh_pt[i_mesh]->element_pt(e - 1) = 0;
187  }
188  // Now clear all element and node storage (should maybe fine-grain this)
189  bulk_face_mesh_pt[i_mesh]->flush_element_and_node_storage();
190 
191  // Finally delete the mesh
192  delete bulk_face_mesh_pt[i_mesh];
193 
194  } // end of loop over meshes
195  }
196 
197 
198  //========================================================================
199  /// Identify the \c FaceElements (stored in the mesh pointed to by
200  /// \c face_mesh_pt) that are adjacent to the bulk elements next to the
201  /// \c boundary_in_bulk_mesh -th boundary of the mesh pointed to by
202  /// \c bulk_mesh_pt. The \c FaceElements must be derived
203  /// from the \c ElementWithExternalElement base class and the adjacent
204  /// bulk elements are stored as their external elements.
205  //========================================================================
206  template<class BULK_ELEMENT, unsigned DIM>
208  Problem* problem_pt,
209  const unsigned& boundary_in_bulk_mesh,
210  Mesh* const& bulk_mesh_pt,
211  Mesh* const& face_mesh_pt,
212  const unsigned& interaction)
213  {
214  // Convert to vector-based storage
215  Vector<unsigned> boundary_in_bulk_mesh_vect(1);
216  boundary_in_bulk_mesh_vect[0] = boundary_in_bulk_mesh;
217  Vector<Mesh*> face_mesh_pt_vect(1);
218  face_mesh_pt_vect[0] = face_mesh_pt;
219 
220  // Call vector-based version
221  setup_bulk_elements_adjacent_to_face_mesh<BULK_ELEMENT, DIM>(
222  problem_pt,
223  boundary_in_bulk_mesh_vect,
224  bulk_mesh_pt,
225  face_mesh_pt_vect,
226  interaction);
227  }
228 
229 
230  //========================================================================
231  /// Set up the two-way multi-domain interactions for the
232  /// problem pointed to by \c problem_pt.
233  /// Use this for cases where first_mesh_pt and second_mesh_pt
234  /// occupy the same physical space and are populated by
235  /// ELEMENT_0 and ELEMENT_1 respectively, and are combined to solve
236  /// a single problem. The elements in two meshes interact both ways
237  /// the elements in each mesh act as "external elements" for the
238  /// elements in the "other" mesh. The interaction indices allow the
239  /// specification of which interaction we're setting up in the two
240  /// meshes. They default to zero, which is appropriate if there's
241  /// only a single interaction.
242  //========================================================================
243  template<class ELEMENT_0, class ELEMENT_1>
245  Problem* problem_pt,
246  Mesh* const& first_mesh_pt,
247  Mesh* const& second_mesh_pt,
248  const unsigned& first_interaction,
249  const unsigned& second_interaction)
250  {
251  // Delete all the current external halo(ed) element and node storage
252  first_mesh_pt->delete_all_external_storage();
253  second_mesh_pt->delete_all_external_storage();
254 
255  // Call setup_multi_domain_interaction in both directions
256  setup_multi_domain_interaction<ELEMENT_1>(
257  problem_pt, first_mesh_pt, second_mesh_pt, first_interaction);
258 
259  setup_multi_domain_interaction<ELEMENT_0>(
260  problem_pt, second_mesh_pt, first_mesh_pt, second_interaction);
261  }
262 
263 
264  //========================================================================
265  /// Function to set up the one-way multi-domain interaction for
266  /// problems where the meshes pointed to by \c mesh_pt and \c external_mesh_pt
267  /// occupy the same physical space, and the elements in \c external_mesh_pt
268  /// act as "external elements" for the \c ElementWithExternalElements
269  /// in \c mesh_pt (but not vice versa):
270  /// - \c mesh_pt points to the mesh of ElemenWithExternalElements for which
271  /// the interaction is set up.
272  /// - \c external_mesh_pt points to the mesh that contains the elements
273  /// of type EXT_ELEMENT that act as "external elements" for the
274  /// \c ElementWithExternalElements in \c mesh_pt.
275  /// - The interaction_index parameter defaults to zero and must be otherwise
276  /// set by the user if there is more than one mesh that provides sources
277  /// for the Mesh pointed to by mesh_pt.
278  //========================================================================
279  template<class EXT_ELEMENT>
281  Problem* problem_pt,
282  Mesh* const& mesh_pt,
283  Mesh* const& external_mesh_pt,
284  const unsigned& interaction_index)
285  {
286  // Bulk elements must not be external elements in this case
288 
289  // Call the auxiliary function with GEOM_OBJECT=EXT_ELEMENT
290  // and EL_DIM_EUL=EL_DIM_LAG=dimension returned from helper function
291  get_dim_helper(problem_pt, mesh_pt, external_mesh_pt);
292 
293  if (Dim > 3)
294  {
295  std::ostringstream error_stream;
296  error_stream << "The elements within the two interacting meshes have a\n"
297  << "dimension not equal to 1, 2 or 3.\n"
298  << "The multi-domain method will not work in this case.\n"
299  << "The dimension is: " << Dim << "\n";
300  throw OomphLibError(
301  error_stream.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
302  }
303 
304  // Wrapper for each dimension (template parameter)
305  aux_setup_multi_domain_interaction<EXT_ELEMENT, EXT_ELEMENT>(
306  problem_pt, mesh_pt, external_mesh_pt, interaction_index);
307  }
308 
309 
310  //========================================================================
311  /// Function to set up the one-way multi-domain interaction for
312  /// FSI-like problems.
313  /// - \c mesh_pt points to the mesh of \c ElemenWithExternalElements for which
314  /// the interaction is set up. In an FSI example, this mesh would contain
315  /// the \c FSIWallElements (either beam/shell elements or the
316  /// \c FSISolidTractionElements that apply the traction to
317  /// a "bulk" solid mesh that is loaded by the fluid.)
318  /// - \c external_mesh_pt points to the mesh that contains the elements
319  /// of type EXT_ELEMENT that provide the "source" for the
320  /// \c ElementWithExternalElements. In an FSI example, this
321  /// mesh would contain the "bulk" fluid elements.
322  /// - \c external_face_mesh_pt points to the mesh of \c FaceElements
323  /// attached to the \c external_mesh_pt. The mesh pointed to by
324  /// \c external_face_mesh_pt has the same dimension as \c mesh_pt.
325  /// The elements contained in \c external_face_mesh_pt are of type
326  /// FACE_ELEMENT_GEOM_OBJECT. In an FSI example, these elements
327  /// are usually the \c FaceElementAsGeomObjects (templated by the
328  /// type of the "bulk" fluid elements to which they are attached)
329  /// that define the FSI boundary of the fluid domain.
330  /// - The interaction_index parameter defaults to zero and must otherwise be
331  /// set by the user if there is more than one mesh that provides "external
332  /// elements" for the Mesh pointed to by mesh_pt (e.g. in the case
333  /// when a beam or shell structure is loaded by fluid from both sides.)
334  //========================================================================
335  template<class EXT_ELEMENT, class FACE_ELEMENT_GEOM_OBJECT>
337  Problem* problem_pt,
338  Mesh* const& mesh_pt,
339  Mesh* const& external_mesh_pt,
340  Mesh* const& external_face_mesh_pt,
341  const unsigned& interaction_index)
342  {
343  // Bulk elements must be external elements in this case
345 
346  // Call the auxiliary routine with GEOM_OBJECT=FACE_ELEMENT_GEOM_OBJECT
347  // and EL_DIM_LAG=Dim, EL_DIM_EUL=Dim+1
348  get_dim_helper(problem_pt, mesh_pt, external_face_mesh_pt);
349 
350  if (Dim > 2)
351  {
352  std::ostringstream error_stream;
353  error_stream << "The elements within the two interacting meshes have a\n"
354  << "dimension not equal to 1 or 2.\n"
355  << "The multi-domain method will not work in this case.\n"
356  << "The dimension is: " << Dim << "\n";
357  throw OomphLibError(
358  error_stream.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
359  }
360 
361  // Call the function that actually does the work
362  aux_setup_multi_domain_interaction<EXT_ELEMENT, FACE_ELEMENT_GEOM_OBJECT>(
363  problem_pt,
364  mesh_pt,
365  external_mesh_pt,
366  interaction_index,
367  external_face_mesh_pt);
368  }
369 
370 
371  //========================================================================
372  /// Function to set up the one-way multi-domain interaction for
373  /// FSI-like problems.
374  /// - \c mesh_pt points to the mesh of \c ElemenWithExternalElements for which
375  /// the interaction is set up. In an FSI example, this mesh would contain
376  /// the \c FSIWallElements (either beam/shell elements or the
377  /// \c FSISolidTractionElements that apply the traction to
378  /// a "bulk" solid mesh that is loaded by the fluid.)
379  /// - \c external_mesh_pt points to the mesh that contains the elements
380  /// of type EXT_ELEMENT that provide the "source" for the
381  /// \c ElementWithExternalElements. In an FSI example, this
382  /// mesh would contain the "bulk" fluid elements.
383  /// - \c external_face_mesh_pt points to the mesh of \c FaceElements
384  /// attached to the \c external_mesh_pt. The mesh pointed to by
385  /// \c external_face_mesh_pt has the same dimension as \c mesh_pt.
386  /// The elements contained in \c external_face_mesh_pt are of type
387  /// FACE_ELEMENT_GEOM_OBJECT. In an FSI example, these elements
388  /// are usually the \c FaceElementAsGeomObjects (templated by the
389  /// type of the "bulk" fluid elements to which they are attached)
390  /// that define the FSI boundary of the fluid domain.
391  /// - The interaction_index parameter defaults to zero and must otherwise be
392  /// set by the user if there is more than one mesh that provides "external
393  /// elements" for the Mesh pointed to by mesh_pt (e.g. in the case
394  /// when a beam or shell structure is loaded by fluid from both sides.)
395  /// .
396  /// Vector-based version operates simultaneously on the meshes contained
397  /// in the vectors.
398  //========================================================================
399  template<class EXT_ELEMENT, class FACE_ELEMENT_GEOM_OBJECT>
401  Problem* problem_pt,
402  const Vector<Mesh*>& mesh_pt,
403  Mesh* const& external_mesh_pt,
404  const Vector<Mesh*>& external_face_mesh_pt,
405  const unsigned& interaction_index)
406  {
407  // How many meshes do we have?
408  unsigned n_mesh = mesh_pt.size();
409 
410 #ifdef PARANOID
411  if (external_face_mesh_pt.size() != n_mesh)
412  {
413  std::ostringstream error_stream;
414  error_stream << "Sizes of external_face_mesh_pt [ "
415  << external_face_mesh_pt.size() << " ] and "
416  << "mesh_pt [ " << n_mesh << " ] don't match.\n";
417  throw OomphLibError(
418  error_stream.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
419  }
420 #endif
421 
422  // Bail out?
423  if (n_mesh == 0) return;
424 
425  // Bulk elements must be external elements in this case
427 
428  // Call the auxiliary routine with GEOM_OBJECT=FACE_ELEMENT_GEOM_OBJECT
429  // and EL_DIM_LAG=Dim, EL_DIM_EUL=Dim+1. Use first mesh only.
430  get_dim_helper(problem_pt, mesh_pt[0], external_face_mesh_pt[0]);
431 
432 
433 #ifdef PARANOID
434  // Check consitency
435  unsigned old_dim = Dim;
436  for (unsigned i = 1; i < n_mesh; i++)
437  {
438  // Set up Dim again
439  get_dim_helper(problem_pt, mesh_pt[i], external_face_mesh_pt[i]);
440 
441  if (Dim != old_dim)
442  {
443  std::ostringstream error_stream;
444  error_stream << "Inconsistency: Mesh " << i << " has Dim=" << Dim
445  << "while mesh 0 has Dim=" << old_dim << std::endl;
446  throw OomphLibError(
447  error_stream.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
448  }
449  }
450 #endif
451 
452  if (Dim > 2)
453  {
454  std::ostringstream error_stream;
455  error_stream << "The elements within the two interacting meshes have a\n"
456  << "dimension not equal to 1 or 2.\n"
457  << "The multi-domain method will not work in this case.\n"
458  << "The dimension is: " << Dim << "\n";
459  throw OomphLibError(
460  error_stream.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
461  }
462 
463  // Now do the actual work for all meshes simultaneously
464  aux_setup_multi_domain_interaction<EXT_ELEMENT, FACE_ELEMENT_GEOM_OBJECT>(
465  problem_pt,
466  mesh_pt,
467  external_mesh_pt,
468  interaction_index,
469  external_face_mesh_pt);
470  }
471 
472 
473  //========================================================================
474  /// This routine calls the locate_zeta routine (simultaneously on each
475  /// processor for each individual processor's element set if necessary)
476  /// and sets up the external (halo) element and node storage as
477  /// necessary. The locate_zeta procedure here works for all multi-domain
478  /// problems where either two meshes occupy the same physical space but have
479  /// differing element types (e.g. a Boussinesq convection problem where
480  /// AdvectionDiffusion elements interact with Navier-Stokes type elements)
481  /// or two meshes interact along some boundary of the external mesh,
482  /// represented by a "face mesh", such as an FSI problem.
483  //========================================================================
484  template<class EXT_ELEMENT, class GEOM_OBJECT>
486  Problem* problem_pt,
487  Mesh* const& mesh_pt,
488  Mesh* const& external_mesh_pt,
489  const unsigned& interaction_index,
490  Mesh* const& external_face_mesh_pt)
491  {
492  // Convert to vector-based storage
493  Vector<Mesh*> mesh_pt_vector(1);
494  mesh_pt_vector[0] = mesh_pt;
495  Vector<Mesh*> external_face_mesh_pt_vector(1);
496  external_face_mesh_pt_vector[0] = external_face_mesh_pt;
497 
498  // Call vector-based version
499  aux_setup_multi_domain_interaction<EXT_ELEMENT, GEOM_OBJECT>(
500  problem_pt,
501  mesh_pt_vector,
502  external_mesh_pt,
503  interaction_index,
504  external_face_mesh_pt_vector);
505 
506  } // end of aux_setup_multi_domain_interaction
507 
508 
509  //========================================================================
510  /// This routine calls the locate_zeta routine (simultaneously on each
511  /// processor for each individual processor's element set if necessary)
512  /// and sets up the external (halo) element and node storage as
513  /// necessary. The locate_zeta procedure here works for all multi-domain
514  /// problems where either two meshes occupy the same physical space but have
515  /// differing element types (e.g. a Boussinesq convection problem where
516  /// AdvectionDiffusion elements interact with Navier-Stokes type elements)
517  /// or two meshes interact along some boundary of the external mesh,
518  /// represented by a "face mesh", such as an FSI problem.
519  ///
520  /// Vector-based version operates simultaneously on the meshes contained
521  /// in the vectors.
522  //========================================================================
523  template<class EXT_ELEMENT, class GEOM_OBJECT>
525  Problem* problem_pt,
526  const Vector<Mesh*>& mesh_pt,
527  Mesh* const& external_mesh_pt,
528  const unsigned& interaction_index,
529  const Vector<Mesh*>& external_face_mesh_pt)
530  {
531  // How many meshes do we have?
532  unsigned n_mesh = mesh_pt.size();
533 
534 #ifdef PARANOID
535  if (external_face_mesh_pt.size() != n_mesh)
536  {
537  std::ostringstream error_stream;
538  error_stream << "Sizes of external_face_mesh_pt [ "
539  << external_face_mesh_pt.size() << " ] and "
540  << "mesh_pt [ " << n_mesh << " ] don't match.\n";
541  throw OomphLibError(
542  error_stream.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
543  }
544 #endif
545 
546  // Bail out?
547  if (n_mesh == 0) return;
548 
549  // Multi-domain setup will not work for elements with
550  // nonuniformly spaced nodes
551  // Must check type of elements in the mesh and in the external mesh
552  //(assume element type is the same for all elements in each mesh)
553 
554 #ifdef PARANOID
555 
556  // Pointer to first element in external mesh
557  GeneralisedElement* ext_el_pt_0 = 0;
558  if (external_mesh_pt->nelement() != 0)
559  {
560  ext_el_pt_0 = external_mesh_pt->element_pt(0);
561  }
562 
563  // Loop over all meshes
564  for (unsigned i_mesh = 0; i_mesh < n_mesh; i_mesh++)
565  {
566  // Get pointer to first element in each mesh
567  GeneralisedElement* el_pt_0 = 0;
568  if (mesh_pt[i_mesh]->nelement() != 0)
569  {
570  el_pt_0 = mesh_pt[i_mesh]->element_pt(0);
571  }
572 
573  // Check they are not spectral elements
574  if (dynamic_cast<SpectralElement*>(el_pt_0) != 0 ||
575  dynamic_cast<SpectralElement*>(ext_el_pt_0) != 0)
576  {
577  throw OomphLibError(
578  "Multi-domain setup does not work with spectral elements.",
579  OOMPH_CURRENT_FUNCTION,
580  OOMPH_EXCEPTION_LOCATION);
581  }
582 
583  // Check they are not hp-refineable elements
584  if (dynamic_cast<PRefineableElement*>(el_pt_0) != 0 ||
585  dynamic_cast<PRefineableElement*>(ext_el_pt_0) != 0)
586  {
587  throw OomphLibError(
588  "Multi-domain setup does not work with hp-refineable elements.",
589  OOMPH_CURRENT_FUNCTION,
590  OOMPH_EXCEPTION_LOCATION);
591  }
592  } // end over initial loop over meshes
593 
594 #endif
595 
596 
597 #ifdef OOMPH_HAS_MPI
598  // Storage for number of processors and my rank
599  int n_proc = problem_pt->communicator_pt()->nproc();
600  int my_rank = problem_pt->communicator_pt()->my_rank();
601 #endif
602 
603  // Timing
604  double t_start = 0.0;
605  double t_end = 0.0;
606  double t_local = 0.0;
607  double t_set = 0.0;
608  double t_locate = 0.0;
609  double t_spiral_start = 0.0;
610 #ifdef OOMPH_HAS_MPI
611  double t_loop_start = 0.0;
612  double t_sendrecv = 0.0;
613  double t_missing = 0.0;
614  double t_send_info = 0.0;
615  double t_create_halo = 0.0;
616 #endif
617 
618  if (Doc_timings)
619  {
620  t_start = TimingHelpers::timer();
621  }
622 
623  // Initialize number of zeta coordinates not found yet
624  unsigned n_zeta_not_found = 0;
625 
626  // Geometric objects used to represent the external (face) meshes
627  Vector<MeshAsGeomObject*> mesh_geom_obj_pt(n_mesh, 0);
628 
629 #ifdef PARANOID
630 
631  // Initialise lagrangian dimension of element (test only)
632  unsigned el_dim_lag = 0;
633 
634 #endif
635 
636  // Create mesh as geom objects for all meshes
637  for (unsigned i_mesh = 0; i_mesh < n_mesh; i_mesh++)
638  {
639  // Are bulk elements used as external elements?
641  {
642  // Fix this when required
643  if (n_mesh != 1)
644  {
645  std::ostringstream error_stream;
646  error_stream
647  << "Sorry I currently can't deal with non-bulk external elements\n"
648  << "in multi-domain setup for multiple meshes.\n"
649  << "The functionality should be easy to implement now that you\n"
650  << "have a test case. If you're not willinig to do this, call\n"
651  << "the multi-domain setup mesh-by-mesh instead (though this can\n"
652  << "be costly in parallel because of global comms. \n";
653  throw OomphLibError(error_stream.str(),
654  OOMPH_CURRENT_FUNCTION,
655  OOMPH_EXCEPTION_LOCATION);
656  }
657 
658  // Set the geometric object from the external mesh
659  mesh_geom_obj_pt[0] = new MeshAsGeomObject(external_mesh_pt);
660  }
661  else
662  {
663  // Set the geometric object from the external face mesh argument
664  mesh_geom_obj_pt[i_mesh] =
665  new MeshAsGeomObject(external_face_mesh_pt[i_mesh]);
666  }
667 
668 #ifdef PARANOID
669  unsigned old_el_dim_lag = el_dim_lag;
670 
671  // Set lagrangian dimension of element
672  el_dim_lag = mesh_geom_obj_pt[i_mesh]->nlagrangian();
673 
674  // Check consistency
675  if (i_mesh > 0)
676  {
677  if (el_dim_lag != old_el_dim_lag)
678  {
679  std::ostringstream error_stream;
680  error_stream << "Lagrangian dimensions of elements don't match \n "
681  << "between meshes: " << el_dim_lag << " "
682  << old_el_dim_lag << "\n";
683  throw OomphLibError(error_stream.str(),
684  OOMPH_CURRENT_FUNCTION,
685  OOMPH_EXCEPTION_LOCATION);
686  }
687  }
688 #endif
689 
690 
691  } // end of loop over meshes
692 
693  double t_setup_lookups = 0.0;
694  if (Doc_timings)
695  {
696  t_set = TimingHelpers::timer();
697  oomph_info << "CPU for creation of MeshAsGeomObjects and bin structure: "
698  << t_set - t_start << std::endl;
699  t_setup_lookups = TimingHelpers::timer();
700  }
701 
702  // Total number of integration points
703  unsigned tot_int = 0;
704 
705  // Counter for total number of elements (in flat packed order)
706  unsigned e_count = 0;
707 
708  // Loop over all meshes to get total number of elements
709  for (unsigned i_mesh = 0; i_mesh < n_mesh; i_mesh++)
710  {
711  e_count += mesh_pt[i_mesh]->nelement();
712  }
713  External_element_located.resize(e_count);
714 
715  // Reset counter for elements in flat packed storage
716  e_count = 0;
717 
718  // Loop over all meshes
719  for (unsigned i_mesh = 0; i_mesh < n_mesh; i_mesh++)
720  {
721  // Loop over (this processor's) elements and set lookup array
722  unsigned n_element = mesh_pt[i_mesh]->nelement();
723  for (unsigned e = 0; e < n_element; e++)
724  {
725  // Zero-sized vector means its a halo
726  External_element_located[e_count].resize(0);
728  dynamic_cast<ElementWithExternalElement*>(
729  mesh_pt[i_mesh]->element_pt(e));
730 
731 #ifdef OOMPH_HAS_MPI
732  // We're not setting up external elements for halo elements
733  if (!el_pt->is_halo())
734 #endif
735  {
736  // We need to allocate storage for the external elements
737  // within the element. Memory will actually only be
738  // allocated the first time this function is called for
739  // each element, or if the number of interactions or integration
740  // points within the element has changed.
742 
743  // Clear any previous allocation
744  unsigned n_intpt = el_pt->integral_pt()->nweight();
745  for (unsigned ipt = 0; ipt < n_intpt; ipt++)
746  {
747  el_pt->external_element_pt(interaction_index, ipt) = 0;
748  }
749 
750  External_element_located[e_count].resize(n_intpt);
751  for (unsigned ipt = 0; ipt < n_intpt; ipt++)
752  {
753  External_element_located[e_count][ipt] = 0;
754  tot_int++;
755  }
756  }
757  // next element
758  e_count++;
759  }
760  } // end of loop over meshes
761 
762  if (Doc_timings)
763  {
764  double t = TimingHelpers::timer();
765  oomph_info
766  << "CPU for setup of lookup schemes for located elements/coords: "
767  << t - t_setup_lookups << std::endl;
768  }
769 
770  // Initialise maximum spiral level within the cartesian bin structure
771  // Used to terminate spiraling for non-refineable bin
772  unsigned n_max_level = 0;
773 
774 #ifdef OOMPH_HAS_MPI
775  unsigned max_level_reached = 1;
776 #endif
777 
778  // Max. number of sample points -- used to decide on termination of
779  // "spiraling"
780  unsigned max_n_sample_points_of_sample_point_containers = 0;
781 
782  // Loop over all meshes
783  for (unsigned i_mesh = 0; i_mesh < n_mesh; i_mesh++)
784  {
785  if (mesh_geom_obj_pt[i_mesh]->sample_point_container_version() ==
787  {
788  RefineableBinArray* bin_array_pt = dynamic_cast<RefineableBinArray*>(
789  mesh_geom_obj_pt[i_mesh]->sample_point_container_pt());
790 
791  bin_array_pt
793  bin_array_pt
795  bin_array_pt
797 
798  unsigned nsp =
800  if (nsp > max_n_sample_points_of_sample_point_containers)
801  {
802  max_n_sample_points_of_sample_point_containers = nsp;
803  }
804 
805 
806 #ifdef OOMPH_HAS_MPI
807  // If the mesh has been distributed we want the max. number
808  // of sample points across all processors
809  if (problem_pt->communicator_pt()->nproc() > 1)
810  {
811  unsigned local_max_n_sample_points_of_sample_point_containers =
812  max_n_sample_points_of_sample_point_containers;
813 
814  // Get maximum over all processors
815  MPI_Allreduce(&local_max_n_sample_points_of_sample_point_containers,
816  &max_n_sample_points_of_sample_point_containers,
817  1,
818  MPI_UNSIGNED,
819  MPI_MAX,
820  problem_pt->communicator_pt()->mpi_comm());
821  }
822 #endif
823  }
824  else if (mesh_geom_obj_pt[i_mesh]->sample_point_container_version() ==
826  {
827  NonRefineableBinArray* bin_array_pt =
828  dynamic_cast<NonRefineableBinArray*>(
829  mesh_geom_obj_pt[i_mesh]->sample_point_container_pt());
830 
831  // Initialise spiral levels
832  bin_array_pt->current_min_spiral_level() = 0;
833  bin_array_pt->current_max_spiral_level() =
834  bin_array_pt->n_spiral_chunk() - 1;
835 
836  // Find maximum spiral level within the cartesian bin structure
837  n_max_level = bin_array_pt->max_bin_dimension();
838 
839  // Limit it
840  if (bin_array_pt->current_max_spiral_level() > n_max_level)
841  {
842  bin_array_pt->current_max_spiral_level() = n_max_level - 1;
843  }
844  }
845 #ifdef OOMPH_HAS_CGAL
846  // CGAL
847  else if (mesh_geom_obj_pt[i_mesh]->sample_point_container_version() ==
849  {
850  CGALSamplePointContainer* bin_array_pt =
851  dynamic_cast<CGALSamplePointContainer*>(
852  mesh_geom_obj_pt[i_mesh]->sample_point_container_pt());
853  bin_array_pt
855  bin_array_pt
857  bin_array_pt
859 
860  unsigned nsp =
862  if (nsp > max_n_sample_points_of_sample_point_containers)
863  {
864  max_n_sample_points_of_sample_point_containers = nsp;
865  }
866 
867 
868 #ifdef OOMPH_HAS_MPI
869  // If the mesh has been distributed we want the max. number
870  // of sample points across all processors
871  if (problem_pt->communicator_pt()->nproc() > 1)
872  {
873  unsigned local_max_n_sample_points_of_sample_point_containers =
874  max_n_sample_points_of_sample_point_containers;
875 
876  // Get maximum over all processors
877  MPI_Allreduce(&local_max_n_sample_points_of_sample_point_containers,
878  &max_n_sample_points_of_sample_point_containers,
879  1,
880  MPI_UNSIGNED,
881  MPI_MAX,
882  problem_pt->communicator_pt()->mpi_comm());
883  }
884 #endif
885  }
886 #endif // cgal
887  }
888 
889 
890  // Storage for info about coordinate location
891  Vector<double> percentage_coords_located_locally;
892  Vector<double> percentage_coords_located_elsewhere;
893 
894  // Loop over "spirals/levels" away from the current position
895  // Note: All meshes go through their spirals simultaneously;
896  // read out spiral level from first one
897  unsigned i_level = 0;
898  bool has_not_reached_max_level_of_search = true;
899  while (has_not_reached_max_level_of_search)
900  {
901  // Record time at start of spiral loop
902  if (Doc_timings)
903  {
904  t_spiral_start = TimingHelpers::timer();
905  }
906 
907  // Perform locate_zeta locally first! This looks locally for
908  // all not-yet-located zetas within the current spiral range.
910  mesh_pt, external_mesh_pt, mesh_geom_obj_pt, interaction_index);
911 
912  // Store stats about successful locates for reporting later
913  if (Doc_stats)
914  {
915  unsigned count_locates = 0;
916  unsigned n_ext_loc = External_element_located.size();
917  for (unsigned e = 0; e < n_ext_loc; e++)
918  {
919  unsigned n_intpt = External_element_located[e].size();
920  for (unsigned ipt = 0; ipt < n_intpt; ipt++)
921  {
922  count_locates += External_element_located[e][ipt];
923  }
924  }
925 
926  // Store percentage of integration points successfully located.
927  // Only assign if we had anything to allocte, otherwise 100%
928  // (default assignment; see above) is correct
929  if (tot_int != 0)
930  {
931  percentage_coords_located_locally.push_back(
932  100.0 * double(count_locates) / double(tot_int));
933  }
934  else
935  {
936  // Had none to find so we found them all!
937  percentage_coords_located_locally.push_back(100.0);
938  }
939  }
940 
941 
942  // Now test whether anything needs to be broadcast elsewhere
943  // (i.e. were there any failures in the locate method above?)
944  // If there are, then the zetas for these failures need to be
945  // broadcast...
946 
947  // How many zetas have we failed to find? [Note: Array is padded
948  // by Dim padded entries (DBL_MAX) for each mesh]
949  n_zeta_not_found =
950  Flat_packed_zetas_not_found_locally.size() - Dim * n_mesh;
951 
952  if (Doc_timings)
953  {
954  t_local = TimingHelpers::timer();
955  oomph_info << "CPU for local location of zeta coordinate [spiral level "
956  << i_level << "]: " << t_local - t_spiral_start << std::endl
957  << "Number of missing zetas: " << n_zeta_not_found
958  << std::endl;
959  }
960 
961 
962 #ifdef OOMPH_HAS_MPI
963  // Only perform the reduction operation if there's more than one process
964  if (problem_pt->communicator_pt()->nproc() > 1)
965  {
966  unsigned count_local_zetas = n_zeta_not_found;
967  MPI_Allreduce(&count_local_zetas,
968  &n_zeta_not_found,
969  1,
970  MPI_UNSIGNED,
971  MPI_SUM,
972  problem_pt->communicator_pt()->mpi_comm());
973  }
974 
975  // If we have missing zetas on any process
976  // and the problem is distributed, we need to locate elsewhere
977  if ((n_zeta_not_found != 0) &&
978  (problem_pt->problem_has_been_distributed()))
979  {
980  // Timings
981  double t_sendrecv_min = DBL_MAX;
982  double t_sendrecv_max = -DBL_MAX;
983  double t_sendrecv_tot = 0.0;
984 
985  double t_missing_min = DBL_MAX;
986  double t_missing_max = -DBL_MAX;
987  double t_missing_tot = 0.0;
988 
989  double t_send_info_min = DBL_MAX;
990  double t_send_info_max = -DBL_MAX;
991  double t_send_info_tot = 0.0;
992 
993  double t_create_halo_min = DBL_MAX;
994  double t_create_halo_max = -DBL_MAX;
995  double t_create_halo_tot = 0.0;
996 
997  // Start ring communication: Loop (number of processes - 1)
998  // starting from 1. The variable iproc represents the "distance" from
999  // the current process to the process for which it is attempting
1000  // to locate an element for the current set of not-yet-located
1001  // zeta coordinates
1002  unsigned ring_count = 0;
1003  for (int iproc = 1; iproc < n_proc; iproc++)
1004  {
1005  // Record time at start of loop
1006  if (Doc_timings)
1007  {
1008  t_loop_start = TimingHelpers::timer();
1009  }
1010 
1011  // Send the zeta values you haven't found to the
1012  // next process, receive from the previous process:
1013  // (Padded) Flat_packed_zetas_not_found_locally are sent
1014  // to next processor where they are received as
1015  // (padded) Received_flat_packed_zetas_to_be_found.
1016  send_and_receive_missing_zetas(problem_pt);
1017 
1018  if (Doc_timings)
1019  {
1020  ring_count++;
1021  t_sendrecv = TimingHelpers::timer();
1022  t_sendrecv_max =
1023  std::max(t_sendrecv_max, t_sendrecv - t_loop_start);
1024  t_sendrecv_min =
1025  std::min(t_sendrecv_min, t_sendrecv - t_loop_start);
1026  t_sendrecv_tot += (t_sendrecv - t_loop_start);
1027  }
1028 
1029  // Perform the locate_zeta for the new set of zetas on this process
1031  iproc, external_mesh_pt, problem_pt, mesh_geom_obj_pt);
1032 
1033  if (Doc_timings)
1034  {
1035  t_missing = TimingHelpers::timer();
1036  t_missing_max = std::max(t_missing_max, t_missing - t_sendrecv);
1037  t_missing_min = std::min(t_missing_min, t_missing - t_sendrecv);
1038  t_missing_tot += (t_missing - t_sendrecv);
1039  }
1040 
1041  // Send any located coordinates back to the correct process, and
1042  // prepare to send on to the next process if necessary
1043  send_and_receive_located_info(iproc, external_mesh_pt, problem_pt);
1044 
1045  if (Doc_timings)
1046  {
1047  t_send_info = TimingHelpers::timer();
1048  t_send_info_max =
1049  std::max(t_send_info_max, t_send_info - t_missing);
1050  t_send_info_min =
1051  std::min(t_send_info_min, t_send_info - t_missing);
1052  t_send_info_tot += (t_send_info - t_missing);
1053  }
1054 
1055  // Create any located external halo elements on the current process
1056  create_external_halo_elements<EXT_ELEMENT>(
1057  iproc, mesh_pt, external_mesh_pt, problem_pt, interaction_index);
1058 
1059  if (Doc_timings)
1060  {
1061  t_create_halo = TimingHelpers::timer();
1062  t_create_halo_max =
1063  std::max(t_create_halo_max, t_create_halo - t_send_info);
1064  t_create_halo_min =
1065  std::min(t_create_halo_min, t_create_halo - t_send_info);
1066  t_create_halo_tot += (t_create_halo - t_send_info);
1067  }
1068 
1069  // Do we have any further locating to do or have we found
1070  // everything at this level of the ring communication?
1071  // Only perform the reduction operation if there's more than
1072  // one process [Note: Array is padded
1073  // by DIM times DBL_MAX entries for each mesh]
1074  n_zeta_not_found =
1075  Flat_packed_zetas_not_found_locally.size() - Dim * n_mesh;
1076 
1077 
1078 #ifdef OOMPH_HAS_MPI
1079  if (problem_pt->communicator_pt()->nproc() > 1)
1080  {
1081  unsigned count_local_zetas = n_zeta_not_found;
1082  MPI_Allreduce(&count_local_zetas,
1083  &n_zeta_not_found,
1084  1,
1085  MPI_UNSIGNED,
1086  MPI_SUM,
1087  problem_pt->communicator_pt()->mpi_comm());
1088  }
1089 #endif
1090 
1091  // If its is now zero then break out of the ring comms loop
1092  if (n_zeta_not_found == 0)
1093  {
1094  if (Doc_timings)
1095  {
1096  t_local = TimingHelpers::timer();
1097  oomph_info << "BREAK N-1: CPU for entrire spiral [spiral level "
1098  << i_level << "]: " << t_local - t_spiral_start
1099  << std::endl;
1100  }
1101  break;
1102  }
1103  }
1104 
1105 
1106  // Doc timings
1107  if (Doc_timings)
1108  {
1109  oomph_info << "Ring-based search continued until iteration "
1110  << ring_count << " out of a maximum of "
1111  << problem_pt->communicator_pt()->nproc() - 1 << "\n";
1112  oomph_info << "Total, av, max, min CPU for send/recv of remaining "
1113  "zeta coordinates: "
1114  << t_sendrecv_tot << " "
1115  << t_sendrecv_tot / double(ring_count) << " "
1116  << t_sendrecv_max << " " << t_sendrecv_min << "\n";
1117  oomph_info << "Total, av, max, min CPU for location of missing zeta "
1118  "coordinates : "
1119  << t_missing_tot << " "
1120  << t_missing_tot / double(ring_count) << " "
1121  << t_missing_max << " " << t_missing_min << "\n";
1122  oomph_info << "Total, av, max, min CPU for send/recv of new element "
1123  "info : "
1124  << t_send_info_tot << " "
1125  << t_send_info_tot / double(ring_count) << " "
1126  << t_send_info_max << " " << t_send_info_min << "\n";
1127  oomph_info << "Total, av, max, min CPU for local creation of "
1128  "external halo objects: "
1129  << t_create_halo_tot << " "
1130  << t_create_halo_tot / double(ring_count) << " "
1131  << t_create_halo_max << " " << t_create_halo_min << "\n";
1132  }
1133 
1134  } // end if for missing zetas on any process
1135 #endif
1136 
1137 
1138  // Store information about location of elements for integration points
1139  if (Doc_stats)
1140  {
1141  unsigned count_locates = 0;
1142  unsigned n_ext_loc = External_element_located.size();
1143  for (unsigned e = 0; e < n_ext_loc; e++)
1144  {
1145  unsigned n_intpt = External_element_located[e].size();
1146  for (unsigned ipt = 0; ipt < n_intpt; ipt++)
1147  {
1148  count_locates += External_element_located[e][ipt];
1149  }
1150  }
1151 
1152 
1153  // Store total percentage of locates so far.
1154  // Only assign if we had anything to allocte, otherwise 100%
1155  // (default assignment) is correct
1156  if (tot_int != 0)
1157  {
1158  percentage_coords_located_elsewhere.push_back(
1159  100.0 * double(count_locates) / double(tot_int));
1160  }
1161  else
1162  {
1163  // Had none to find so we found them all!
1164  percentage_coords_located_locally.push_back(100.0);
1165  }
1166  }
1167 
1168  // Do we have any further locating to do? If so, the remaining
1169  // zetas will (hopefully) be found at the next spiral level.
1170  // Only perform the reduction operation if there's more than one process
1171  // [Note: Array is padded
1172  // by DIM times DBL_MAX entries for each mesh]
1173  n_zeta_not_found =
1174  Flat_packed_zetas_not_found_locally.size() - Dim * n_mesh;
1175 
1176 
1177 #ifdef OOMPH_HAS_MPI
1178  if (problem_pt->communicator_pt()->nproc() > 1)
1179  {
1180  unsigned count_local_zetas = n_zeta_not_found;
1181  MPI_Allreduce(&count_local_zetas,
1182  &n_zeta_not_found,
1183  1,
1184  MPI_UNSIGNED,
1185  MPI_SUM,
1186  problem_pt->communicator_pt()->mpi_comm());
1187  }
1188 
1189  // Specify max level reached for later loop
1190  max_level_reached = i_level + 1;
1191 #endif
1192 
1193  /// If it's is now zero then break out of the spirals loop
1194  if (n_zeta_not_found == 0)
1195  {
1196  if (Doc_timings)
1197  {
1198  t_local = TimingHelpers::timer();
1199  oomph_info << "BREAK N: CPU for entrire spiral [spiral level "
1200  << i_level << "]: " << t_local - t_spiral_start
1201  << std::endl;
1202  }
1203  break;
1204  }
1205 
1206  if (Doc_timings)
1207  {
1208  t_local = TimingHelpers::timer();
1209  oomph_info << "CPU for entrire spiral [spiral level " << i_level
1210  << "]: " << t_local - t_spiral_start << std::endl;
1211  }
1212 
1213  // Bump up spiral levels for all meshes
1214  i_level++;
1215  for (unsigned i_mesh = 0; i_mesh < n_mesh; i_mesh++)
1216  {
1217  if (mesh_geom_obj_pt[i_mesh]->sample_point_container_version() ==
1219  {
1220  RefineableBinArray* bin_array_pt = dynamic_cast<RefineableBinArray*>(
1221  mesh_geom_obj_pt[i_mesh]->sample_point_container_pt());
1222  bin_array_pt
1224  bin_array_pt
1226  bin_array_pt
1228  bin_array_pt
1230  }
1231  else if (mesh_geom_obj_pt[i_mesh]->sample_point_container_version() ==
1233  {
1234  NonRefineableBinArray* bin_array_pt =
1235  dynamic_cast<NonRefineableBinArray*>(
1236  mesh_geom_obj_pt[i_mesh]->sample_point_container_pt());
1237 
1238  bin_array_pt->current_min_spiral_level() +=
1239  bin_array_pt->n_spiral_chunk();
1240  bin_array_pt->current_max_spiral_level() +=
1241  bin_array_pt->n_spiral_chunk();
1242  }
1243 #ifdef OOMPH_HAS_CGAL
1244  else if (mesh_geom_obj_pt[i_mesh]->sample_point_container_version() ==
1246  {
1247  CGALSamplePointContainer* bin_array_pt =
1248  dynamic_cast<CGALSamplePointContainer*>(
1249  mesh_geom_obj_pt[i_mesh]->sample_point_container_pt());
1250  bin_array_pt
1252  bin_array_pt
1254  bin_array_pt
1256  bin_array_pt
1258  }
1259 #endif // cgal
1260  }
1261 
1262  // Check termination criterion for while loop
1263  if (mesh_geom_obj_pt[0]->sample_point_container_version() ==
1265  {
1266  RefineableBinArray* bin_array_pt = dynamic_cast<RefineableBinArray*>(
1267  mesh_geom_obj_pt[0]->sample_point_container_pt());
1268 
1269  if (bin_array_pt
1270  ->first_sample_point_to_actually_lookup_during_locate_zeta() <=
1271  max_n_sample_points_of_sample_point_containers)
1272  {
1273  has_not_reached_max_level_of_search = true;
1274  }
1275  else
1276  {
1277  has_not_reached_max_level_of_search = false;
1278  }
1279  }
1280  else if (mesh_geom_obj_pt[0]->sample_point_container_version() ==
1282  {
1283  NonRefineableBinArray* bin_array_pt =
1284  dynamic_cast<NonRefineableBinArray*>(
1285  mesh_geom_obj_pt[0]->sample_point_container_pt());
1286 
1287  if (bin_array_pt->current_max_spiral_level() < n_max_level)
1288  {
1289  has_not_reached_max_level_of_search = true;
1290  }
1291  else
1292  {
1293  has_not_reached_max_level_of_search = false;
1294  }
1295  }
1296 #ifdef OOMPH_HAS_CGAL
1297  else if (mesh_geom_obj_pt[0]->sample_point_container_version() ==
1299  {
1300  CGALSamplePointContainer* bin_array_pt =
1301  dynamic_cast<CGALSamplePointContainer*>(
1302  mesh_geom_obj_pt[0]->sample_point_container_pt());
1303 
1304  if (bin_array_pt
1305  ->first_sample_point_to_actually_lookup_during_locate_zeta() <=
1306  max_n_sample_points_of_sample_point_containers)
1307  {
1308  has_not_reached_max_level_of_search = true;
1309  }
1310  else
1311  {
1312  has_not_reached_max_level_of_search = false;
1313  }
1314  }
1315 #endif // cgal
1316  } // end of "spirals" loop
1317 
1318 
1319  // If we haven't found all zetas we're dead now...
1320  //-------------------------------------------------
1321  if (n_zeta_not_found != 0)
1322  {
1323  // Shout?
1325  {
1326  std::ostringstream error_stream;
1327  error_stream
1328  << "Multi_domain_functions::locate_zeta_for_local_coordinates()"
1329  << "\nhas failed ";
1330 
1331 #ifdef OOMPH_HAS_MPI
1332  if (problem_pt->communicator_pt()->nproc() > 1)
1333  {
1334  error_stream << " on proc: "
1335  << problem_pt->communicator_pt()->my_rank() << std::endl;
1336  }
1337 #endif
1338  error_stream
1339  << "\n\n\nThis is most likely to arise because the two meshes\n"
1340  << "that are to be matched don't overlap perfectly or\n"
1341  << "because the elements are distorted and too small a \n"
1342  << "number of sampling points has been used when setting\n"
1343  << "up the bin structure.\n\n"
1344  << "You should try to increase the value of \n"
1345  << "the number of sample points defined in \n\n"
1346  << " "
1347  "SamplePointContainerParameters::Default_nsample_points_generated_"
1348  "per_element"
1349  << "\n\n from its current value of "
1350  << SamplePointContainerParameters::
1351  Default_nsample_points_generated_per_element
1352  << "\n"
1353  << "\n\n"
1354  << "NOTE: You can suppress this error and \"accept failure\""
1355  << " by setting the public boolean \n\n"
1356  << " "
1357  "Multi_domain_functions::Accept_failed_locate_zeta_in_setup_multi_"
1358  "domain_interaction\n\n"
1359  << " to true. In this case, the pointers to external elements\n"
1360  << " that couldn't be located will remain null\n";
1361 
1362  std::ostringstream modifier;
1363 #ifdef OOMPH_HAS_MPI
1364  if (problem_pt->communicator_pt()->nproc() > 1)
1365  {
1366  modifier << "_proc" << problem_pt->communicator_pt()->my_rank();
1367  }
1368 #endif
1369 
1370  // Loop over all meshes
1371  for (unsigned i_mesh = 0; i_mesh < n_mesh; i_mesh++)
1372  {
1373  // Add yet another modifier to distinguish meshes if reqd
1374  if (n_mesh > 1)
1375  {
1376  modifier << "_mesh" << i_mesh;
1377  }
1378 
1379  std::ofstream outfile;
1380  char filename[100];
1381  sprintf(
1382  filename, "missing_coords_mesh%s.dat", modifier.str().c_str());
1383  outfile.open(filename);
1384  unsigned nel = mesh_pt[i_mesh]->nelement();
1385  for (unsigned e = 0; e < nel; e++)
1386  {
1387  mesh_pt[i_mesh]->finite_element_pt(e)->output(outfile);
1388  // FiniteElement::output(outfile);
1389  }
1390  outfile.close();
1391 
1392  sprintf(
1393  filename, "missing_coords_ext_mesh%s.dat", modifier.str().c_str());
1394  outfile.open(filename);
1395  nel = external_mesh_pt->nelement();
1396  for (unsigned e = 0; e < nel; e++)
1397  {
1398  external_mesh_pt->finite_element_pt(e)->output(outfile);
1399  // FiniteElement::output(outfile);
1400  }
1401  outfile.close();
1402 
1403  BinArray* bin_array_pt = dynamic_cast<BinArray*>(
1404  mesh_geom_obj_pt[i_mesh]->sample_point_container_pt());
1405  if (bin_array_pt != 0)
1406  {
1407  sprintf(
1408  filename, "missing_coords_bin%s.dat", modifier.str().c_str());
1409  outfile.open(filename);
1410  bin_array_pt->output_bins(outfile);
1411  outfile.close();
1412  }
1413 
1414  sprintf(filename, "missing_coords%s.dat", modifier.str().c_str());
1415  outfile.open(filename);
1416  unsigned n = External_element_located.size();
1417  error_stream << "Number of unlocated elements " << n << std::endl;
1418  for (unsigned e = 0; e < n; e++)
1419  {
1420  unsigned n_intpt = External_element_located[e].size();
1421  if (n_intpt == 0)
1422  {
1423  error_stream << "Failure to locate in halo element! "
1424  << "Why are we searching there?" << std::endl;
1425  }
1426  for (unsigned ipt = 0; ipt < n_intpt; ipt++)
1427  {
1428  if (External_element_located[e][ipt] == 0)
1429  {
1430  error_stream << "Failure at element/intpt: " << e << " " << ipt
1431  << std::endl;
1432 
1433  // Cast
1435  dynamic_cast<ElementWithExternalElement*>(
1436  mesh_pt[i_mesh]->element_pt(e));
1437 
1438  unsigned n_dim_el = el_pt->dim();
1439  Vector<double> s(n_dim_el);
1440  for (unsigned i = 0; i < n_dim_el; i++)
1441  {
1442  s[i] = el_pt->integral_pt()->knot(ipt, i);
1443  }
1444  unsigned n_dim = el_pt->node_pt(0)->ndim();
1445  Vector<double> x(n_dim);
1446  el_pt->interpolated_x(s, x);
1447  for (unsigned i = 0; i < n_dim; i++)
1448  {
1449  error_stream << x[i] << " ";
1450  outfile << x[i] << " ";
1451  }
1452  error_stream << std::endl;
1453  outfile << std::endl;
1454  }
1455  }
1456  }
1457  outfile.close();
1458  }
1459 
1460  error_stream
1461  << "Mesh and external mesh documented in missing_coords_mesh*.dat\n"
1462  << "and missing_coords_ext_mesh*.dat, respectively. Missing \n"
1463  << "coordinates in missing_coords*.dat\n";
1464  throw OomphLibError(
1465  error_stream.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
1466  }
1467  // Failure is deeemed to be acceptable
1468  else
1469  {
1470  oomph_info
1471  << "NOTE: Haven't found " << n_zeta_not_found
1472  << " external elements in \n"
1473  << "Multi_domain_functions::aux_setup_multi_domain_interaction(...)\n"
1474  << "but this deemed to be acceptable because \n"
1475  << "Multi_domain_functions::Accept_failed_locate_zeta_in_setup_multi_"
1476  "domain_interaction\n"
1477  << "is true.\n";
1478  }
1479  }
1480 
1481 
1482  // Doc timings if required
1483  if (Doc_timings)
1484  {
1485  t_locate = TimingHelpers::timer();
1486  oomph_info
1487  << "Total CPU for location and creation of all external elements: "
1488  << t_locate - t_start << std::endl;
1489  }
1490 
1491  // Delete the geometric object representing the mesh
1492  for (unsigned i_mesh = 0; i_mesh < n_mesh; i_mesh++)
1493  {
1494  delete mesh_geom_obj_pt[i_mesh];
1495  }
1496 
1497  // Clean up all the (extern) Vectors associated with creating the
1498  // external storage information
1499  clean_up();
1500 
1501 #ifdef OOMPH_HAS_MPI
1502 
1503  // Output information about external storage if required
1504  if (Doc_stats)
1505  {
1506  // Report stats regarding location method
1507  bool comm_was_required = false;
1508  oomph_info << "-------------------------------------------" << std::endl;
1509  oomph_info << "- Cumulative percentage of locate success -" << std::endl;
1510  oomph_info << "--- Spiral -- Found local -- Found else ---" << std::endl;
1511  for (unsigned level = 0; level < max_level_reached; level++)
1512  {
1513  oomph_info << "--- " << level << " -- "
1514  << percentage_coords_located_locally[level] << " -- "
1515  << percentage_coords_located_elsewhere[level] << " ---"
1516  << std::endl;
1517  // Has communication with other processors at this level actually
1518  // produced any results?
1519  if (percentage_coords_located_elsewhere[level] >
1520  percentage_coords_located_locally[level])
1521  {
1522  comm_was_required = true;
1523  }
1524  }
1525  oomph_info << "-------------------------------------------" << std::endl;
1526 
1527 
1528  // No need for any of this malaki if we're not running in parallel
1529  if (problem_pt->communicator_pt()->nproc() > 1)
1530  {
1531  // Initialise to indicate that none of the zetas required
1532  // on this processor were located through parallel ring search,
1533  // i.e. comm was not required and we could have done some
1534  // more local searching first
1535  oomph_info << std::endl;
1536  oomph_info << "ASSESSMENT OF NEED FOR PARALLEL SEARCH: \n";
1537  oomph_info << "=======================================\n";
1538  unsigned status = 0;
1539  if (comm_was_required)
1540  {
1541  oomph_info << "- Ring-based parallel search did successfully locate "
1542  "zetas on proc "
1543  << my_rank << std::endl;
1544  status = 1;
1545  }
1546  else
1547  {
1548  if (max_level_reached > 1)
1549  {
1550  oomph_info
1551  << "- Ring-based parallel search did NOT locate zetas on proc"
1552  << my_rank << std::endl;
1553  }
1554  else
1555  {
1556  oomph_info
1557  << "- No ring-based parallel search was performed on proc"
1558  << my_rank << std::endl;
1559  }
1560  }
1561 
1562  // Allreduce to check if anyone has benefitted from parallel ring
1563  // search
1564  unsigned overall_status = 0;
1565  MPI_Allreduce(&status,
1566  &overall_status,
1567  1,
1568  MPI_UNSIGNED,
1569  MPI_MAX,
1570  problem_pt->communicator_pt()->mpi_comm());
1571 
1572  // Report of mpi was useful to anyone
1573  if (overall_status == 1)
1574  {
1575  oomph_info << "- Ring-based, parallel search did succesfully\n";
1576  oomph_info << " locate zetas on at least one other proc, so it\n";
1577  oomph_info << " was worthwhile.\n";
1578  oomph_info << std::endl;
1579  }
1580  else
1581  {
1582  if (max_level_reached > 1)
1583  {
1584  oomph_info
1585  << "- Ring-based, parallel search did NOT locate zetas\n";
1586  oomph_info << " on ANY other procs, i.e it was useless.\n";
1587  oomph_info
1588  << " --> We should really have done more local search\n";
1589  oomph_info
1590  << " by reducing number of bins, or doing more spirals\n";
1591  oomph_info << " in one go before initiating parallel search.\n";
1592  oomph_info << std::endl;
1593  }
1594  else
1595  {
1596  oomph_info << "- No ring-based, parallel search was performed\n";
1597  oomph_info << " or necessary. Perfect!\n";
1598  oomph_info << std::endl;
1599  }
1600  }
1601  }
1602 
1603  // How many external elements does the external mesh have now?
1604  oomph_info << "------------------------------------------" << std::endl;
1605  oomph_info << "External mesh: I have " << external_mesh_pt->nelement()
1606  << " elements, and " << std::endl
1607  << external_mesh_pt->nexternal_halo_element()
1608  << " external halo elements, "
1609  << external_mesh_pt->nexternal_haloed_element()
1610  << " external haloed elements" << std::endl;
1611 
1612  // How many external nodes does each submesh have now?
1613  oomph_info << "------------------------------------------" << std::endl;
1614  oomph_info << "External mesh: I have " << external_mesh_pt->nnode()
1615  << " nodes, and " << std::endl
1616  << external_mesh_pt->nexternal_halo_node()
1617  << " external halo nodes, "
1618  << external_mesh_pt->nexternal_haloed_node()
1619  << " external haloed nodes" << std::endl;
1620  oomph_info << "------------------------------------------" << std::endl;
1621  }
1622 
1623  // Output further information about (external) halo(ed)
1624  // elements and nodes if required
1625  if (Doc_full_stats)
1626  {
1627  // How many elements does this submesh have for each of the processors?
1628  for (int iproc = 0; iproc < n_proc; iproc++)
1629  {
1630  oomph_info << "----------------------------------------" << std::endl;
1631  oomph_info << "With process " << iproc << " there are "
1632  << external_mesh_pt->nroot_halo_element(iproc)
1633  << " root halo elements, and "
1634  << external_mesh_pt->nroot_haloed_element(iproc)
1635  << " root haloed elements" << std::endl
1636  << "and there are "
1637  << external_mesh_pt->nexternal_halo_element(iproc)
1638  << " external halo elements, and "
1639  << external_mesh_pt->nexternal_haloed_element(iproc)
1640  << " external haloed elements." << std::endl;
1641 
1642  oomph_info << "----------------------------------------" << std::endl;
1643  oomph_info << "With process " << iproc << " there are "
1644  << external_mesh_pt->nhalo_node(iproc) << " halo nodes, and "
1645  << external_mesh_pt->nhaloed_node(iproc) << " haloed nodes"
1646  << std::endl
1647  << "and there are "
1648  << external_mesh_pt->nexternal_halo_node(iproc)
1649  << " external halo nodes, and "
1650  << external_mesh_pt->nexternal_haloed_node(iproc)
1651  << " external haloed nodes." << std::endl;
1652  }
1653  oomph_info << "-----------------------------------------" << std::endl
1654  << std::endl;
1655  }
1656 
1657 #endif
1658 
1659  // Doc timings if required
1660  if (Doc_timings)
1661  {
1662  t_end = TimingHelpers::timer();
1663  oomph_info << "CPU for (one way) aux_setup_multi_domain_interaction: "
1664  << t_end - t_start << std::endl;
1665  }
1666 
1667  } // end of aux_setup_multi_domain_interaction
1668 
1669 #ifdef OOMPH_HAS_MPI
1670 
1671  //=====================================================================
1672  /// Creates external (halo) elements on the loop process based on the
1673  /// information received from each locate_zeta call on other processes.
1674  /// vector based version
1675  //=====================================================================
1676  template<class EXT_ELEMENT>
1678  int& iproc,
1679  const Vector<Mesh*>& mesh_pt,
1680  Mesh* const& external_mesh_pt,
1681  Problem* problem_pt,
1682  const unsigned& interaction_index)
1683  {
1684  OomphCommunicator* comm_pt = problem_pt->communicator_pt();
1685  int my_rank = comm_pt->my_rank();
1686 
1687  // Reset counters for flat packed unsigneds (namespace data because
1688  // it's also accessed by helper functions)
1691 
1692  // Initialise counter for stepping through zetas
1693  unsigned zeta_counter = 0;
1694 
1695  // Initialise counter for stepping through flat-packed located
1696  // coordinates
1697  unsigned counter_for_located_coord = 0;
1698 
1699  // Counter for elements in flag packed storage
1700  unsigned e_count = 0;
1701 
1702  // Loop over all meshes
1703  unsigned n_mesh = mesh_pt.size();
1704  for (unsigned i_mesh = 0; i_mesh < n_mesh; i_mesh++)
1705  {
1706  // The creation all happens on the current processor
1707  // Loop over this processors elements
1708  unsigned n_element = mesh_pt[i_mesh]->nelement();
1709  for (unsigned e = 0; e < n_element; e++)
1710  {
1711  // Cast to ElementWithExternalElement to set external element
1712  // (if located)
1714  dynamic_cast<ElementWithExternalElement*>(
1715  mesh_pt[i_mesh]->element_pt(e));
1716 
1717  // We're not setting up external elements for halo elements
1718  // (Note: this is consistent with padding introduced when
1719  // External_element_located was first assigned)
1720  if (!el_pt->is_halo())
1721  {
1722  // Loop over integration points
1723  unsigned n_intpt = el_pt->integral_pt()->nweight();
1724  for (unsigned ipt = 0; ipt < n_intpt; ipt++)
1725  {
1726  // Has an external element been assigned to this integration point?
1727  if (External_element_located[e_count][ipt] == 0)
1728  {
1729  // Was a (non-halo) element located for this integration point
1730  if (((Proc_id_plus_one_of_external_element[zeta_counter] - 1) ==
1731  my_rank) ||
1732  (Proc_id_plus_one_of_external_element[zeta_counter] == 0))
1733  {
1734  // Either it was already found, or not found on the current
1735  // proc. In either case, we don't need to do anything for this
1736  // integration point
1737  }
1738  else
1739  {
1740  // Get the process number on which the element was located
1741  unsigned loc_p =
1742  Proc_id_plus_one_of_external_element[zeta_counter] - 1;
1743 
1744  // Is it a new external halo element or not?
1745  // If so, then create it, populate it, and add it as a
1746  // source; if not, then find the right one which
1747  // has already been created and use it as the source
1748  // element.
1749 
1750  // FiniteElement stored at this integration point
1751  FiniteElement* f_el_pt = 0;
1752 
1753  // Is it a new element?
1754  if (Located_element_status[zeta_counter] == New)
1755  {
1756  // Create a new element from the communicated values
1757  // and coords from the process that located zeta
1758  GeneralisedElement* new_el_pt = new EXT_ELEMENT;
1759 
1760  // Add external halo element to this mesh
1761  external_mesh_pt->add_external_halo_element_pt(loc_p,
1762  new_el_pt);
1763 
1764  // Cast to the FE pointer
1765  f_el_pt = dynamic_cast<FiniteElement*>(new_el_pt);
1766 
1767  // We need the number of interpolated values if Refineable
1768  int n_cont_inter_values = -1;
1769  if (dynamic_cast<RefineableElement*>(new_el_pt) != 0)
1770  {
1771  n_cont_inter_values =
1772  dynamic_cast<RefineableElement*>(new_el_pt)
1773  ->ncont_interpolated_values();
1774  }
1775 
1776  // If we're using macro elements to update
1777 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
1778  oomph_info
1780  << " Using macro element node update "
1782  << std::endl;
1783 #endif
1786  {
1787  // Set the macro element
1788  MacroElementNodeUpdateMesh* macro_mesh_pt =
1789  dynamic_cast<MacroElementNodeUpdateMesh*>(
1790  external_mesh_pt);
1791 
1792 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
1794  << " Number of macro element "
1797  << std::endl;
1798 #endif
1799  unsigned macro_el_num = Flat_packed_unsigneds
1801  f_el_pt->set_macro_elem_pt(
1802  macro_mesh_pt->macro_domain_pt()->macro_element_pt(
1803  macro_el_num));
1804 
1805 
1806  // We need to receive the lower left
1807  // and upper right coordinates of the macro element
1808  QElementBase* q_el_pt =
1809  dynamic_cast<QElementBase*>(new_el_pt);
1810  if (q_el_pt != 0)
1811  {
1812  unsigned el_dim = q_el_pt->dim();
1813  for (unsigned i_dim = 0; i_dim < el_dim; i_dim++)
1814  {
1815  q_el_pt->s_macro_ll(i_dim) = Flat_packed_doubles
1817  q_el_pt->s_macro_ur(i_dim) = Flat_packed_doubles
1819  }
1820  }
1821  else // Throw an error, since this is only implemented for Q
1822  {
1823  std::ostringstream error_stream;
1824  error_stream << "Using MacroElement node update\n"
1825  << "in a case with non-QElements\n"
1826  << "has not yet been implemented.\n";
1827  throw OomphLibError(error_stream.str(),
1828  OOMPH_CURRENT_FUNCTION,
1829  OOMPH_EXCEPTION_LOCATION);
1830  }
1831  }
1832 
1833  // Now we add nodes to the new element
1834  unsigned n_node = f_el_pt->nnode();
1835  for (unsigned j = 0; j < n_node; j++)
1836  {
1837  Node* new_nod_pt = 0;
1838 
1839  // Call the add external halo node helper function
1840  add_external_halo_node_to_storage<EXT_ELEMENT>(
1841  new_nod_pt,
1842  external_mesh_pt,
1843  loc_p,
1844  j,
1845  f_el_pt,
1846  n_cont_inter_values,
1847  problem_pt);
1848  }
1849  }
1850  else // the element already exists as an external_halo
1851  {
1852 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
1853  oomph_info
1855  << " Index of existing external halo element "
1857  << std::endl;
1858 #endif
1859  // The index itself is in Flat_packed_unsigneds[...]
1860  unsigned external_halo_el_index =
1862 
1863  // Use this index to get the element
1864  f_el_pt = dynamic_cast<FiniteElement*>(
1865  external_mesh_pt->external_halo_element_pt(
1866  loc_p, external_halo_el_index));
1867 
1868  // If it's not a finite element die
1869  if (f_el_pt == 0)
1870  {
1871  throw OomphLibError(
1872  "External halo element is not a FiniteElement\n",
1873  OOMPH_CURRENT_FUNCTION,
1874  OOMPH_EXCEPTION_LOCATION);
1875  }
1876  }
1877 
1878  // The source element storage was initialised but
1879  // not filled earlier, so do it now
1880  // The located coordinates are required
1881  // (which could be a different dimension to zeta, e.g. in FSI)
1882  unsigned el_dim = f_el_pt->dim();
1883  Vector<double> s_located(el_dim);
1884  for (unsigned i = 0; i < el_dim; i++)
1885  {
1886  s_located[i] =
1887  Flat_packed_located_coordinates[counter_for_located_coord];
1888  counter_for_located_coord++;
1889  }
1890 
1891  // Set the element for this integration point
1892  el_pt->external_element_pt(interaction_index, ipt) = f_el_pt;
1893  el_pt->external_element_local_coord(interaction_index, ipt) =
1894  s_located;
1895 
1896  // Set the lookup array to true
1897  External_element_located[e_count][ipt] = 1;
1898  }
1899 
1900  // Increment the integration point counter
1901  zeta_counter++;
1902  }
1903  } // end loop over integration points
1904  } // end of is halo
1905 
1906  // Bump flat-packed element counter
1907  e_count++;
1908 
1909  } // end of loop over elements
1910 
1911  // Bump up zeta counter to skip over padding entry at end of
1912  // mesh
1913  zeta_counter++;
1914 
1915  } // end loop over meshes
1916  }
1917 
1918 
1919  //============start of add_external_halo_node_to_storage===============
1920  /// Helper function to add external halo nodes, including any masters,
1921  /// based on information received from the haloed process
1922  //=========================================================================
1923  template<class EXT_ELEMENT>
1925  Node*& new_nod_pt,
1926  Mesh* const& external_mesh_pt,
1927  unsigned& loc_p,
1928  unsigned& node_index,
1929  FiniteElement* const& new_el_pt,
1930  int& n_cont_inter_values,
1931  Problem* problem_pt)
1932  {
1933  // Add the external halo node if required
1934  add_external_halo_node_helper(new_nod_pt,
1935  external_mesh_pt,
1936  loc_p,
1937  node_index,
1938  new_el_pt,
1939  n_cont_inter_values,
1940  problem_pt);
1941 
1942  // Recursively add masters
1943  recursively_add_masters_of_external_halo_node_to_storage<EXT_ELEMENT>(
1944  new_nod_pt,
1945  external_mesh_pt,
1946  loc_p,
1947  node_index,
1948  new_el_pt,
1949  n_cont_inter_values,
1950  problem_pt);
1951  }
1952 
1953 
1954  //========================================================================
1955  /// Recursively add masters of external halo nodes (and their masters, etc)
1956  /// based on information received from the haloed process
1957  //=========================================================================
1958  template<class EXT_ELEMENT>
1961  Node*& new_nod_pt,
1962  Mesh* const& external_mesh_pt,
1963  unsigned& loc_p,
1964  unsigned& node_index,
1965  FiniteElement* const& new_el_pt,
1966  int& n_cont_inter_values,
1967  Problem* problem_pt)
1968  {
1969  for (int i_cont = -1; i_cont < n_cont_inter_values; i_cont++)
1970  {
1971 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
1973  << " Boolean to indicate that continuously interpolated "
1974  "variable i_cont "
1975  << i_cont << " is hanging "
1977  << std::endl;
1978 #endif
1980  {
1981 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
1983  << " Number of master nodes "
1985  << std::endl;
1986 #endif
1987  unsigned n_master =
1989 
1990  // Setup new HangInfo
1991  HangInfo* hang_pt = new HangInfo(n_master);
1992  for (unsigned m = 0; m < n_master; m++)
1993  {
1994  Node* master_nod_pt = 0;
1995  // Get the master node (creating and adding it if required)
1996  add_external_halo_master_node_helper<EXT_ELEMENT>(master_nod_pt,
1997  new_nod_pt,
1998  external_mesh_pt,
1999  loc_p,
2000  n_cont_inter_values,
2001  problem_pt);
2002 
2003  // Get the weight and set the HangInfo
2004  double master_weight =
2006  hang_pt->set_master_node_pt(m, master_nod_pt, master_weight);
2007 
2008  // Recursively add masters of master
2009  recursively_add_masters_of_external_halo_node_to_storage<EXT_ELEMENT>(
2010  master_nod_pt,
2011  external_mesh_pt,
2012  loc_p,
2013  node_index,
2014  new_el_pt,
2015  n_cont_inter_values,
2016  problem_pt);
2017  }
2018  new_nod_pt->set_hanging_pt(hang_pt, i_cont);
2019  }
2020  } // end loop over continous interpolated values
2021  }
2022 
2023  //========================================================================
2024  /// Helper function to add external halo node that is a master
2025  //========================================================================
2026  template<class EXT_ELEMENT>
2028  Node*& new_master_nod_pt,
2029  Node*& new_nod_pt,
2030  Mesh* const& external_mesh_pt,
2031  unsigned& loc_p,
2032  int& ncont_inter_values,
2033  Problem* problem_pt)
2034  {
2035  // Given the node and the external mesh, and received information
2036  // about them from process loc_p, construct them on the current process
2037 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2038  oomph_info
2040  << " Boolean to trigger construction of new external halo master node "
2042 #endif
2044  {
2045  // Construct a new node based upon sent information
2046  construct_new_external_halo_master_node_helper<EXT_ELEMENT>(
2047  new_master_nod_pt, new_nod_pt, loc_p, external_mesh_pt, problem_pt);
2048  }
2049  else
2050  {
2051 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2053  << " index of existing external halo master node "
2055  << std::endl;
2056 #endif
2057  // Copy node from received location
2058  new_master_nod_pt = external_mesh_pt->external_halo_node_pt(
2060  }
2061  }
2062 
2063  //======start of construct_new_external_halo_master_node_helper===========
2064  /// Helper function which constructs a new external halo master node
2065  /// with the required information sent from the haloed process
2066  //========================================================================
2067  template<class EXT_ELEMENT>
2069  Node*& new_master_nod_pt,
2070  Node*& nod_pt,
2071  unsigned& loc_p,
2072  Mesh* const& external_mesh_pt,
2073  Problem* problem_pt)
2074  {
2075  // First three sent numbers are dimension, position type and nvalue
2076  // (to be used in Node constructors)
2077 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2079  << " ndim for external halo master node "
2081  << std::endl;
2082 #endif
2084 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2086  << " nposition type for external halo master node "
2088  << std::endl;
2089 #endif
2090  unsigned n_position_type =
2092 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2094  << " nvalue for external halo master node "
2096  << std::endl;
2097 #endif
2098  unsigned n_value =
2100 
2101  // If it's a solid node also receive the lagrangian dimension and pos type
2102  SolidNode* solid_nod_pt = dynamic_cast<SolidNode*>(nod_pt);
2103  unsigned n_lag_dim;
2104  unsigned n_lag_type;
2105  if (solid_nod_pt != 0)
2106  {
2107 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2109  << " nlagrdim for external halo master solid node "
2111  << std::endl;
2112 #endif
2114 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2116  << " nlagrtype for external halo master solid node "
2118  << std::endl;
2119 #endif
2121  }
2122 
2123  // Null TimeStepper for now
2124  TimeStepper* time_stepper_pt = 0;
2125  // Default number of previous values to 1
2126  unsigned n_prev = 1;
2127 
2128  // The first entry in nodal_info indicates
2129  // the timestepper required for this halo node
2130 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2132  << " Boolean: need timestepper "
2134  << std::endl;
2135 #endif
2137  {
2138 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2140  << " Index minus one of timestepper "
2142  << std::endl;
2143 #endif
2144  // Index minus one!
2145  time_stepper_pt = problem_pt->time_stepper_pt(
2147 
2148  // Check whether number of prev values is "sent" across
2149  n_prev = time_stepper_pt->ntstorage();
2150  }
2151 
2152  // Is the node for which the master is required Algebraic, Macro or Solid?
2153  AlgebraicNode* alg_nod_pt = dynamic_cast<AlgebraicNode*>(nod_pt);
2154  MacroElementNodeUpdateNode* macro_nod_pt =
2155  dynamic_cast<MacroElementNodeUpdateNode*>(nod_pt);
2156 
2157  // What type of node was the node for which we are constructing a master?
2158  if (alg_nod_pt != 0)
2159  {
2160  // The master node should also be algebraic
2161 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2163  << " Boolean for algebraic boundary node "
2165  << std::endl;
2166 #endif
2167  // If this master node's haloed copy is on a boundary then
2168  // it needs to be on the same boundary here
2170  {
2171  // Create a new BoundaryNode (not attached to an element)
2172  if (time_stepper_pt != 0)
2173  {
2174  new_master_nod_pt = new BoundaryNode<AlgebraicNode>(
2175  time_stepper_pt, n_dim, n_position_type, n_value);
2176  }
2177  else
2178  {
2179  new_master_nod_pt =
2180  new BoundaryNode<AlgebraicNode>(n_dim, n_position_type, n_value);
2181  }
2182 
2183  // How many boundaries does the algebraic master node live on?
2184 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2186  << " Number of boundaries the algebraic master node is on: "
2188  << std::endl;
2189 #endif
2190  unsigned nb =
2192  for (unsigned i = 0; i < nb; i++)
2193  {
2194  // Boundary number
2195 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2197  << " Algebraic master node is on boundary "
2199  << std::endl;
2200 #endif
2201  unsigned i_bnd =
2203  external_mesh_pt->add_boundary_node(i_bnd, new_master_nod_pt);
2204  }
2205 
2206 
2207  // Do we have additional values created by face elements?
2208 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2209  oomph_info << "Rec:" << Counter_for_flat_packed_unsigneds << " "
2210  << "Number of additional values created by face element "
2211  << "for master node "
2213  << std::endl;
2214 #endif
2215  unsigned n_entry =
2217  if (n_entry > 0)
2218  {
2219  // Create storage, if it doesn't already exist, for the map
2220  // that will contain the position of the first entry of
2221  // this face element's additional values,
2222  BoundaryNodeBase* bnew_master_nod_pt =
2223  dynamic_cast<BoundaryNodeBase*>(new_master_nod_pt);
2224 #ifdef PARANOID
2225  if (bnew_master_nod_pt == 0)
2226  {
2227  throw OomphLibError("Failed to cast new node to boundary node\n",
2228  OOMPH_CURRENT_FUNCTION,
2229  OOMPH_EXCEPTION_LOCATION);
2230  }
2231 #endif
2232  if (bnew_master_nod_pt
2233  ->index_of_first_value_assigned_by_face_element_pt() == 0)
2234  {
2235  bnew_master_nod_pt
2237  new std::map<unsigned, unsigned>;
2238  }
2239 
2240  // Get pointer to the map of indices associated with
2241  // additional values created by face elements
2242  std::map<unsigned, unsigned>* map_pt =
2243  bnew_master_nod_pt
2245 
2246  // Loop over number of entries in map
2247  for (unsigned i = 0; i < n_entry; i++)
2248  {
2249  // Read out pairs...
2250 
2251 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2252  oomph_info
2254  << " Key of map entry for master node"
2256  << std::endl;
2257 #endif
2258  unsigned first =
2260 
2261 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2262  oomph_info
2264  << " Value of map entry for master node"
2266  << std::endl;
2267 #endif
2268  unsigned second =
2270 
2271  // ...and assign
2272  (*map_pt)[first] = second;
2273  }
2274  }
2275  }
2276  else
2277  {
2278  // Create node (not attached to any element)
2279  if (time_stepper_pt != 0)
2280  {
2281  new_master_nod_pt =
2282  new AlgebraicNode(time_stepper_pt, n_dim, n_position_type, n_value);
2283  }
2284  else
2285  {
2286  new_master_nod_pt =
2287  new AlgebraicNode(n_dim, n_position_type, n_value);
2288  }
2289  }
2290 
2291  // Add this as an external halo node BEFORE considering node update!
2292  external_mesh_pt->add_external_halo_node_pt(loc_p, new_master_nod_pt);
2293 
2294  // The external mesh is itself Algebraic...
2295  AlgebraicMesh* alg_mesh_pt =
2296  dynamic_cast<AlgebraicMesh*>(external_mesh_pt);
2297 
2298 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2300  << " algebraic node update id for master node "
2302  << std::endl;
2303 #endif
2304  /// The first entry of All_unsigned_values is the default node update id
2305  unsigned update_id =
2307 
2308  // Setup algebraic node update info for this new node
2309  Vector<double> ref_value;
2310 
2311 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2313  << " algebraic node number of ref values for master node "
2315  << std::endl;
2316 #endif
2317  // The size of this vector is in the next entry
2318  unsigned n_ref_val =
2320 
2321  // The reference values are in the subsequent entries of All_double_values
2322  ref_value.resize(n_ref_val);
2323  for (unsigned i_ref = 0; i_ref < n_ref_val; i_ref++)
2324  {
2325  ref_value[i_ref] =
2327  }
2328 
2329  // Also require a Vector of geometric objects
2330  Vector<GeomObject*> geom_object_pt;
2331 
2332 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2334  << " algebraic node number of geom objects for master node "
2336  << std::endl;
2337 #endif
2338 
2339  // The size of this vector is in the next entry of All_unsigned_values
2340  unsigned n_geom_obj =
2342 
2343  // The remaining indices are in the rest of
2344  // All_alg_nodal_info
2345  geom_object_pt.resize(n_geom_obj);
2346  for (unsigned i_geom = 0; i_geom < n_geom_obj; i_geom++)
2347  {
2348 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2350  << " algebraic node: " << i_geom << "-th out of "
2351  << n_geom_obj << "-th geom index "
2353  << std::endl;
2354 #endif
2355  unsigned geom_index =
2357 
2358  // This index indicates which (if any) of the AlgebraicMesh's
2359  // stored geometric objects should be used
2360  geom_object_pt[i_geom] = alg_mesh_pt->geom_object_list_pt(geom_index);
2361  }
2362 
2363  AlgebraicNode* alg_master_nod_pt =
2364  dynamic_cast<AlgebraicNode*>(new_master_nod_pt);
2365 
2366  /// ... so for the specified update_id, call
2367  /// add_node_update_info
2368  alg_master_nod_pt->add_node_update_info(
2369  update_id, alg_mesh_pt, geom_object_pt, ref_value);
2370 
2371  /// Now call update_node_update
2372  alg_mesh_pt->update_node_update(alg_master_nod_pt);
2373  }
2374  else if (macro_nod_pt != 0)
2375  {
2376  // The master node should also be a macro node
2377  // If this master node's haloed copy is on a boundary then
2378  // it needs to be on the same boundary here
2379 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2381  << " Boolean for master algebraic node is boundary node "
2383  << std::endl;
2384 #endif
2386  {
2387  // Create a new BoundaryNode (not attached to an element)
2388  if (time_stepper_pt != 0)
2389  {
2390  new_master_nod_pt = new BoundaryNode<MacroElementNodeUpdateNode>(
2391  time_stepper_pt, n_dim, n_position_type, n_value);
2392  }
2393  else
2394  {
2395  new_master_nod_pt = new BoundaryNode<MacroElementNodeUpdateNode>(
2396  n_dim, n_position_type, n_value);
2397  }
2398 
2399 
2400  // How many boundaries does the macro element master node live on?
2401 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2402  oomph_info
2404  << " Number of boundaries the macro element master node is on: "
2406  << std::endl;
2407 #endif
2408  unsigned nb =
2410  for (unsigned i = 0; i < nb; i++)
2411  {
2412  // Boundary number
2413 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2415  << " Macro element master node is on boundary "
2417  << std::endl;
2418 #endif
2419  unsigned i_bnd =
2421  external_mesh_pt->add_boundary_node(i_bnd, new_master_nod_pt);
2422  }
2423 
2424  // Do we have additional values created by face elements?
2425 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2427  << " Number of additional values created by face element "
2428  << "for macro element master node "
2430  << std::endl;
2431 #endif
2432  unsigned n_entry =
2434  if (n_entry > 0)
2435  {
2436  // Create storage, if it doesn't already exist, for the map
2437  // that will contain the position of the first entry of
2438  // this face element's additional values,
2439  BoundaryNodeBase* bnew_master_nod_pt =
2440  dynamic_cast<BoundaryNodeBase*>(new_master_nod_pt);
2441 #ifdef PARANOID
2442  if (bnew_master_nod_pt == 0)
2443  {
2444  throw OomphLibError("Failed to cast new node to boundary node\n",
2445  OOMPH_CURRENT_FUNCTION,
2446  OOMPH_EXCEPTION_LOCATION);
2447  }
2448 #endif
2449  if (bnew_master_nod_pt
2450  ->index_of_first_value_assigned_by_face_element_pt() == 0)
2451  {
2452  bnew_master_nod_pt
2454  new std::map<unsigned, unsigned>;
2455  }
2456 
2457  // Get pointer to the map of indices associated with
2458  // additional values created by face elements
2459  std::map<unsigned, unsigned>* map_pt =
2460  bnew_master_nod_pt
2462 
2463  // Loop over number of entries in map
2464  for (unsigned i = 0; i < n_entry; i++)
2465  {
2466  // Read out pairs...
2467 
2468 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2469  oomph_info
2471  << " Key of map entry for macro element master node"
2473  << std::endl;
2474 #endif
2475  unsigned first =
2477 
2478 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2479  oomph_info
2481  << " Value of map entry for macro element master node"
2483  << std::endl;
2484 #endif
2485  unsigned second =
2487 
2488  // ...and assign
2489  (*map_pt)[first] = second;
2490  }
2491  }
2492  }
2493  else
2494  {
2495  // Create node (not attached to any element)
2496  if (time_stepper_pt != 0)
2497  {
2498  new_master_nod_pt = new MacroElementNodeUpdateNode(
2499  time_stepper_pt, n_dim, n_position_type, n_value);
2500  }
2501  else
2502  {
2503  new_master_nod_pt =
2504  new MacroElementNodeUpdateNode(n_dim, n_position_type, n_value);
2505  }
2506  }
2507 
2508  // Add this as an external halo node
2509  external_mesh_pt->add_external_halo_node_pt(loc_p, new_master_nod_pt);
2510 
2511  // Create a new node update element for this master node if required
2512  FiniteElement* new_node_update_f_el_pt = 0;
2513 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2515  << " Bool: need new external halo element "
2517  << std::endl;
2518 #endif
2520  {
2521  GeneralisedElement* new_node_update_el_pt = new EXT_ELEMENT;
2522 
2523  // Add external hal element to this mesh
2524  external_mesh_pt->add_external_halo_element_pt(loc_p,
2525  new_node_update_el_pt);
2526 
2527  // Cast to finite element
2528  new_node_update_f_el_pt =
2529  dynamic_cast<FiniteElement*>(new_node_update_el_pt);
2530 
2531  // Need number of interpolated values if Refineable
2532  int n_cont_inter_values;
2533  if (dynamic_cast<RefineableElement*>(new_node_update_f_el_pt) != 0)
2534  {
2535  n_cont_inter_values =
2536  dynamic_cast<RefineableElement*>(new_node_update_f_el_pt)
2537  ->ncont_interpolated_values();
2538  }
2539  else
2540  {
2541  n_cont_inter_values = -1;
2542  }
2543 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2545  << " Bool: we have a macro element mesh "
2547  << std::endl;
2548 #endif
2549  // If we're using macro elements to update,
2551  {
2552  // Set the macro element
2553  MacroElementNodeUpdateMesh* macro_mesh_pt =
2554  dynamic_cast<MacroElementNodeUpdateMesh*>(external_mesh_pt);
2555 
2556 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2558  << " Number of macro element "
2560  << std::endl;
2561 #endif
2562  unsigned macro_el_num =
2564  new_node_update_f_el_pt->set_macro_elem_pt(
2565  macro_mesh_pt->macro_domain_pt()->macro_element_pt(macro_el_num));
2566 
2567  // we need to receive
2568  // the lower left and upper right coordinates of the macro
2569  QElementBase* q_el_pt =
2570  dynamic_cast<QElementBase*>(new_node_update_f_el_pt);
2571  if (q_el_pt != 0)
2572  {
2573  unsigned el_dim = q_el_pt->dim();
2574  for (unsigned i_dim = 0; i_dim < el_dim; i_dim++)
2575  {
2576  q_el_pt->s_macro_ll(i_dim) =
2578  q_el_pt->s_macro_ur(i_dim) =
2580  }
2581  }
2582  else // Throw an error
2583  {
2584  std::ostringstream error_stream;
2585  error_stream << "You are using a MacroElement node update\n"
2586  << "in a case with non-QElements. This has not\n"
2587  << "yet been implemented.\n";
2588  throw OomphLibError(error_stream.str(),
2589  OOMPH_CURRENT_FUNCTION,
2590  OOMPH_EXCEPTION_LOCATION);
2591  }
2592  }
2593 
2594  unsigned n_node = new_node_update_f_el_pt->nnode();
2595  for (unsigned j = 0; j < n_node; j++)
2596  {
2597  Node* new_nod_pt = 0;
2598  add_external_halo_node_to_storage<EXT_ELEMENT>(
2599  new_nod_pt,
2600  external_mesh_pt,
2601  loc_p,
2602  j,
2603  new_node_update_f_el_pt,
2604  n_cont_inter_values,
2605  problem_pt);
2606  }
2607  }
2608  else // The node update element exists already
2609  {
2610 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2612  << " Number of already existing external halo element "
2614  << std::endl;
2615 #endif
2616  new_node_update_f_el_pt = dynamic_cast<FiniteElement*>(
2617  external_mesh_pt->external_halo_element_pt(
2619  }
2620 
2621  // Remaining required information to create functioning
2622  // MacroElementNodeUpdateNode...
2623 
2624  // Get the required geom objects for the node update
2625  // from the mesh
2626  Vector<GeomObject*> geom_object_vector_pt;
2627  MacroElementNodeUpdateMesh* macro_mesh_pt =
2628  dynamic_cast<MacroElementNodeUpdateMesh*>(external_mesh_pt);
2629  geom_object_vector_pt = macro_mesh_pt->geom_object_vector_pt();
2630 
2631  // Cast to MacroElementNodeUpdateNode
2632  MacroElementNodeUpdateNode* macro_master_nod_pt =
2633  dynamic_cast<MacroElementNodeUpdateNode*>(new_master_nod_pt);
2634 
2635  // Set all required information - node update element,
2636  // local coordinate in this element, and then set node update info
2637  macro_master_nod_pt->node_update_element_pt() = new_node_update_f_el_pt;
2638 
2639  // Need to get the local node index of the macro_master_nod_pt
2640  unsigned local_node_index;
2641  unsigned n_node = new_node_update_f_el_pt->nnode();
2642  for (unsigned j = 0; j < n_node; j++)
2643  {
2644  if (macro_master_nod_pt == new_node_update_f_el_pt->node_pt(j))
2645  {
2646  local_node_index = j;
2647  break;
2648  }
2649  }
2650 
2651  Vector<double> s_in_macro_node_update_element;
2652  new_node_update_f_el_pt->local_coordinate_of_node(
2653  local_node_index, s_in_macro_node_update_element);
2654 
2655  macro_master_nod_pt->set_node_update_info(new_node_update_f_el_pt,
2656  s_in_macro_node_update_element,
2657  geom_object_vector_pt);
2658  }
2659  else if (solid_nod_pt != 0)
2660  {
2661  // The master node should also be a SolidNode
2662  // If this node was on a boundary then it needs to
2663  // be on the same boundary here
2664 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2666  << " Bool master is a boundary (solid) node "
2668  << std::endl;
2669 #endif
2671  {
2672  // Construct a new boundary node
2673  if (time_stepper_pt != 0)
2674  {
2675  new_master_nod_pt = new BoundaryNode<SolidNode>(time_stepper_pt,
2676  n_lag_dim,
2677  n_lag_type,
2678  n_dim,
2679  n_position_type,
2680  n_value);
2681  }
2682  else
2683  {
2684  new_master_nod_pt = new BoundaryNode<SolidNode>(
2685  n_lag_dim, n_lag_type, n_dim, n_position_type, n_value);
2686  }
2687 
2688 
2689  // How many boundaries does the macro element master node live on?
2690 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2692  << " Number of boundaries the solid master node is on: "
2694  << std::endl;
2695 #endif
2696  unsigned nb =
2698  for (unsigned i = 0; i < nb; i++)
2699  {
2700  // Boundary number
2701 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2703  << " Solid master node is on boundary "
2705  << std::endl;
2706 #endif
2707  unsigned i_bnd =
2709  external_mesh_pt->add_boundary_node(i_bnd, new_master_nod_pt);
2710  }
2711 
2712  // Do we have additional values created by face elements?
2713 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2715  << " Number of additional values created by face element "
2716  << "for solid master node "
2718  << std::endl;
2719 #endif
2720  unsigned n_entry =
2722  if (n_entry > 0)
2723  {
2724  // Create storage, if it doesn't already exist, for the map
2725  // that will contain the position of the first entry of
2726  // this face element's additional values,
2727  BoundaryNodeBase* bnew_master_nod_pt =
2728  dynamic_cast<BoundaryNodeBase*>(new_master_nod_pt);
2729 #ifdef PARANOID
2730  if (bnew_master_nod_pt == 0)
2731  {
2732  throw OomphLibError("Failed to cast new node to boundary node\n",
2733  OOMPH_CURRENT_FUNCTION,
2734  OOMPH_EXCEPTION_LOCATION);
2735  }
2736 #endif
2737  if (bnew_master_nod_pt
2738  ->index_of_first_value_assigned_by_face_element_pt() == 0)
2739  {
2740  bnew_master_nod_pt
2742  new std::map<unsigned, unsigned>;
2743  }
2744 
2745  // Get pointer to the map of indices associated with
2746  // additional values created by face elements
2747  std::map<unsigned, unsigned>* map_pt =
2748  bnew_master_nod_pt
2750 
2751  // Loop over number of entries in map
2752  for (unsigned i = 0; i < n_entry; i++)
2753  {
2754  // Read out pairs...
2755 
2756 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2757  oomph_info
2759  << " Key of map entry for solid master node"
2761  << std::endl;
2762 #endif
2763  unsigned first =
2765 
2766 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2767  oomph_info
2769  << " Value of map entry for solid master node"
2771  << std::endl;
2772 #endif
2773  unsigned second =
2775 
2776  // ...and assign
2777  (*map_pt)[first] = second;
2778  }
2779  }
2780  }
2781  else
2782  {
2783  // Construct an ordinary (non-boundary) node
2784  if (time_stepper_pt != 0)
2785  {
2786  new_master_nod_pt = new SolidNode(time_stepper_pt,
2787  n_lag_dim,
2788  n_lag_type,
2789  n_dim,
2790  n_position_type,
2791  n_value);
2792  }
2793  else
2794  {
2795  new_master_nod_pt = new SolidNode(
2796  n_lag_dim, n_lag_type, n_dim, n_position_type, n_value);
2797  }
2798  }
2799 
2800  // Add this as an external halo node
2801  external_mesh_pt->add_external_halo_node_pt(loc_p, new_master_nod_pt);
2802 
2803  // Copy across particular info required for SolidNode
2804  // NOTE: Are there any problems with additional values for SolidNodes?
2805  SolidNode* solid_master_nod_pt =
2806  dynamic_cast<SolidNode*>(new_master_nod_pt);
2807  unsigned n_solid_val =
2808  solid_master_nod_pt->variable_position_pt()->nvalue();
2809  for (unsigned i_val = 0; i_val < n_solid_val; i_val++)
2810  {
2811  for (unsigned t = 0; t < n_prev; t++)
2812  {
2813  solid_master_nod_pt->variable_position_pt()->set_value(
2815  }
2816  }
2817  }
2818  else // Just an ordinary node!
2819  {
2820 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2822  << " Bool node is on boundary "
2824  << std::endl;
2825 #endif
2826 
2827  // If this node was on a boundary then it needs to
2828  // be on the same boundary here
2830  {
2831  // Construct a new boundary node
2832  if (time_stepper_pt != 0)
2833  {
2834  new_master_nod_pt = new BoundaryNode<Node>(
2835  time_stepper_pt, n_dim, n_position_type, n_value);
2836  }
2837  else
2838  {
2839  new_master_nod_pt =
2840  new BoundaryNode<Node>(n_dim, n_position_type, n_value);
2841  }
2842 
2843  // How many boundaries does the master node live on?
2844 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2846  << " Number of boundaries the master node is on: "
2848  << std::endl;
2849 #endif
2850  unsigned nb =
2852  for (unsigned i = 0; i < nb; i++)
2853  {
2854  // Boundary number
2855 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2857  << " Master node is on boundary "
2859  << std::endl;
2860 #endif
2861  unsigned i_bnd =
2863  external_mesh_pt->add_boundary_node(i_bnd, new_master_nod_pt);
2864  }
2865 
2866 
2867  // Do we have additional values created by face elements?
2868 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2870  << " Number of additional values created by face element "
2871  << "for master node "
2873  << std::endl;
2874 #endif
2875  unsigned n_entry =
2877  if (n_entry > 0)
2878  {
2879  // Create storage, if it doesn't already exist, for the map
2880  // that will contain the position of the first entry of
2881  // this face element's additional values,
2882  BoundaryNodeBase* bnew_master_nod_pt =
2883  dynamic_cast<BoundaryNodeBase*>(new_master_nod_pt);
2884 #ifdef PARANOID
2885  if (bnew_master_nod_pt == 0)
2886  {
2887  throw OomphLibError("Failed to cast new node to boundary node\n",
2888  OOMPH_CURRENT_FUNCTION,
2889  OOMPH_EXCEPTION_LOCATION);
2890  }
2891 #endif
2892  if (bnew_master_nod_pt
2893  ->index_of_first_value_assigned_by_face_element_pt() == 0)
2894  {
2895  bnew_master_nod_pt
2897  new std::map<unsigned, unsigned>;
2898  }
2899 
2900  // Get pointer to the map of indices associated with
2901  // additional values created by face elements
2902  std::map<unsigned, unsigned>* map_pt =
2903  bnew_master_nod_pt
2905 
2906  // Loop over number of entries in map
2907  for (unsigned i = 0; i < n_entry; i++)
2908  {
2909  // Read out pairs...
2910 
2911 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2912  oomph_info
2914  << " Key of map entry for master node"
2916  << std::endl;
2917 #endif
2918  unsigned first =
2920 
2921 #ifdef ANNOTATE_MULTI_DOMAIN_COMMUNICATION
2922  oomph_info
2924  << " Value of map entry for master node"
2926  << std::endl;
2927 #endif
2928  unsigned second =
2930 
2931  // ...and assign
2932  (*map_pt)[first] = second;
2933  }
2934  }
2935  }
2936  else
2937  {
2938  // Construct an ordinary (non-boundary) node
2939  if (time_stepper_pt != 0)
2940  {
2941  new_master_nod_pt =
2942  new Node(time_stepper_pt, n_dim, n_position_type, n_value);
2943  }
2944  else
2945  {
2946  new_master_nod_pt = new Node(n_dim, n_position_type, n_value);
2947  }
2948  }
2949 
2950  // Add this as an external halo node
2951  external_mesh_pt->add_external_halo_node_pt(loc_p, new_master_nod_pt);
2952  }
2953 
2954  // Remaining info received for all node types
2955  // Get copied history values
2956  // unsigned n_val=new_master_nod_pt->nvalue();
2957  for (unsigned i_val = 0; i_val < n_value; i_val++)
2958  {
2959  for (unsigned t = 0; t < n_prev; t++)
2960  {
2961  new_master_nod_pt->set_value(
2963  }
2964  }
2965 
2966  // Get copied history values for positions
2967  unsigned n_nod_dim = new_master_nod_pt->ndim();
2968  for (unsigned idim = 0; idim < n_nod_dim; idim++)
2969  {
2970  for (unsigned t = 0; t < n_prev; t++)
2971  {
2972  // Copy to coordinate
2973  new_master_nod_pt->x(t, idim) =
2975  }
2976  }
2977  }
2978 
2979 
2980 #endif
2981 
2982 
2983 } // namespace oomph
2984 
2985 #endif
e
Definition: cfortran.h:571
static char t char * s
Definition: cfortran.h:568
cstr elem_len * i
Definition: cfortran.h:603
char t
Definition: cfortran.h:568
///////////////////////////////////////////////////////////////////// ///////////////////////////////...
unsigned max_bin_dimension() const
Max. bin dimension (number of bins in coordinate directions)
virtual void output_bins(std::ofstream &outfile)=0
Output bins (boundaries and number of sample points in them)
///////////////////////////////////////////////////////////////////// ///////////////////////////////...
unsigned & multiplier_for_max_sample_point_to_actually_lookup_during_locate_zeta()
Every time we've completed a "spiral", visiting a finite number of sample points in a deterministic o...
unsigned & last_sample_point_to_actually_lookup_during_locate_zeta()
When searching through sample points only actually do the locate_zeta calls when when the counter is ...
unsigned & initial_last_sample_point_to_actually_lookup_during_locate_zeta()
When searching through sample points only actually do the locate_zeta calls when when the counter exc...
unsigned & first_sample_point_to_actually_lookup_during_locate_zeta()
When searching through sample points only actually do the locate_zeta calls when when the counter exc...
unsigned total_number_of_sample_points_computed_recursively() const
Compute total number of sample points in sample point container.
///////////////////////////////////////////////////////////////////////////// ///////////////////////...
unsigned n_spiral_chunk() const
Number of spirals to be searched in one go const version.
unsigned & current_max_spiral_level()
Access function to current max. spiral level.
unsigned & current_min_spiral_level()
Access function to current min. spiral level.
///////////////////////////////////////////////////////////////////// ///////////////////////////////...
unsigned total_number_of_sample_points_computed_recursively() const
Compute total number of sample points recursively.
unsigned & initial_last_sample_point_to_actually_lookup_during_locate_zeta()
When searching through sample points recursively from the top level RefineableBinArray (in determinis...
unsigned & first_sample_point_to_actually_lookup_during_locate_zeta()
When searching through sample points recursively from the top level RefineableBinArray (in determinis...
unsigned & last_sample_point_to_actually_lookup_during_locate_zeta()
When searching through sample points recursively from the top level RefineableBinArray (in determinis...
unsigned & multiplier_for_max_sample_point_to_actually_lookup_during_locate_zeta()
Every time we've completed a "spiral", visiting a finite number of sample points in a deterministic o...
////////////////////////////////////////////////////////////////////
virtual void update_node_update(AlgebraicNode *&node_pt)=0
Update the node update info for given node, following mesh adaptation. Must be implemented for every ...
GeomObject * geom_object_list_pt(const unsigned &i)
Access function to the ith GeomObject.
////////////////////////////////////////////////////////////////////
void add_node_update_info(const int &id, AlgebraicMesh *mesh_pt, const Vector< GeomObject * > &geom_object_pt, const Vector< double > &ref_value, const bool &called_from_constructor=false)
Add algebraic update information for node: What's the ID of the mesh update function (typically used ...
A class that contains the information required by Nodes that are located on Mesh boundaries....
Definition: nodes.h:1996
std::map< unsigned, unsigned > *& index_of_first_value_assigned_by_face_element_pt()
Return pointer to the map giving the index of the first face element value.
Definition: nodes.h:2046
A template Class for BoundaryNodes; that is Nodes that MAY live on the boundary of a Mesh....
Definition: nodes.h:2242
A class to do comparison of the elements by lexicographic ordering, based on the boundary coordinates...
void set_value(const unsigned &i, const double &value_)
Set the i-th stored data value to specified value. The only reason that we require an explicit set fu...
Definition: nodes.h:271
unsigned nvalue() const
Return number of values stored in data object (incl pinned ones).
Definition: nodes.h:483
MacroElement * macro_element_pt(const unsigned &i)
Access to i-th macro element.
Definition: domain.h:116
This is a base class for all elements that require external sources (e.g. FSI, multi-domain problems ...
Vector< double > & external_element_local_coord(const unsigned &interaction_index, const unsigned &ipt)
Access function to get source element's local coords for specified interaction index at specified int...
void initialise_external_element_storage()
Initialise storage for pointers to external elements and their local coordinates. This must be called...
FiniteElement *& external_element_pt(const unsigned &interaction_index, const unsigned &ipt)
Access function to source element for specified interaction index at specified integration point.
Class that is used to create FaceElement from bulk elements and to provide these FaceElement with a g...
double interpolated_x(const Vector< double > &s, const unsigned &i) const
Return FE interpolated coordinate x[i] at local coordinate s. Overloaded to get information from bulk...
Definition: elements.h:4532
void set_boundary_number_in_bulk_mesh(const unsigned &b)
Set function for the boundary number in bulk mesh.
Definition: elements.h:4486
A general Finite Element class.
Definition: elements.h:1317
virtual void set_macro_elem_pt(MacroElement *macro_elem_pt)
Set pointer to macro element – can be overloaded in derived elements to perform additional tasks.
Definition: elements.h:1876
virtual void local_coordinate_of_node(const unsigned &j, Vector< double > &s) const
Get local coordinates of node j in the element; vector sets its own size (broken virtual)
Definition: elements.h:1846
Node *& node_pt(const unsigned &n)
Return a pointer to the local node n.
Definition: elements.h:2179
virtual void output(std::ostream &outfile)
Output the element data — typically the values at the nodes in a format suitable for post-processing.
Definition: elements.h:3054
virtual std::string tecplot_zone_string(const unsigned &nplot) const
Return string for tecplot zone header (when plotting nplot points in each "coordinate direction")
Definition: elements.h:3165
void interpolated_zeta(const Vector< double > &s, Vector< double > &zeta) const
Calculate the interpolated value of zeta, the intrinsic coordinate of the element when viewed as a co...
Definition: elements.cc:4705
virtual double interpolated_x(const Vector< double > &s, const unsigned &i) const
Return FE interpolated coordinate x[i] at local coordinate s.
Definition: elements.cc:3992
unsigned dim() const
Return the spatial dimension of the element, i.e. the number of local coordinates required to paramet...
Definition: elements.h:2615
unsigned nnode() const
Return the number of nodes.
Definition: elements.h:2214
Integral *const & integral_pt() const
Return the pointer to the integration scheme (const version)
Definition: elements.h:1967
virtual void get_s_plot(const unsigned &i, const unsigned &nplot, Vector< double > &s, const bool &shifted_to_interior=false) const
Get cector of local coordinates of plot point i (when plotting nplot points in each "coordinate direc...
Definition: elements.h:3152
virtual unsigned nplot_points(const unsigned &nplot) const
Return total number of plot points (when plotting nplot points in each "coordinate direction")
Definition: elements.h:3190
virtual void write_tecplot_zone_footer(std::ostream &outfile, const unsigned &nplot) const
Add tecplot zone "footer" to output stream (when plotting nplot points in each "coordinate direction"...
Definition: elements.h:3178
A Generalised Element class.
Definition: elements.h:73
bool is_halo() const
Is this element a halo?
Definition: elements.h:1167
Class that contains data for hanging nodes.
Definition: nodes.h:742
void set_master_node_pt(const unsigned &i, Node *const &master_node_pt, const double &weight)
Set the pointer to the i-th master node and its weight.
Definition: nodes.cc:1474
virtual double knot(const unsigned &i, const unsigned &j) const =0
Return local coordinate s[j] of i-th integration point.
virtual unsigned nweight() const =0
Return the number of integration points of the scheme.
MacroElementNodeUpdateMeshes contain MacroElementNodeUpdateNodes which have their own node update fun...
Vector< GeomObject * > geom_object_vector_pt()
Access function to the vector of GeomObject.
Domain *& macro_domain_pt()
Broken assignment operator.
////////////////////////////////////////////////////////////////////
FiniteElement *& node_update_element_pt()
Pointer to finite element that performs the update by referring to its macro-element representation (...
void set_node_update_info(FiniteElement *node_update_element_pt, const Vector< double > &s_in_node_update_element, const Vector< GeomObject * > &geom_object_pt)
Set node update information for node: Pass the pointer to the element that performs the update operat...
///////////////////////////////////////////////////////////////////// ///////////////////////////////...
A general mesh class.
Definition: mesh.h:67
void add_boundary_node(const unsigned &b, Node *const &node_pt)
Add a (pointer to) a node to the b-th boundary.
Definition: mesh.cc:243
unsigned nexternal_haloed_element()
Total number of external haloed elements in this Mesh.
Definition: mesh.h:2267
unsigned nexternal_halo_node()
Total number of external halo nodes in this Mesh.
Definition: mesh.h:2308
void add_external_halo_element_pt(const unsigned &p, GeneralisedElement *&el_pt)
Add external halo element whose non-halo counterpart is held on processor p to this Mesh.
Definition: mesh.h:2259
Node *& external_halo_node_pt(const unsigned &p, const unsigned &j)
Access fct to the j-th external halo node in this Mesh whose non-halo external counterpart is held on...
Definition: mesh.h:2377
FiniteElement * finite_element_pt(const unsigned &e) const
Upcast (downcast?) to FiniteElement (needed to access FiniteElement member functions).
Definition: mesh.h:473
GeneralisedElement *& external_halo_element_pt(const unsigned &p, const unsigned &e)
Access fct to the e-th external halo element in this Mesh whose non-halo counterpart is held on proce...
Definition: mesh.h:2251
GeneralisedElement *& element_pt(const unsigned long &e)
Return pointer to element e.
Definition: mesh.h:448
unsigned long nnode() const
Return number of nodes in the mesh.
Definition: mesh.h:596
unsigned nroot_haloed_element()
Total number of root haloed elements in this Mesh.
Definition: mesh.h:1921
void delete_all_external_storage()
Wipe the storage for all externally-based elements.
Definition: mesh.cc:9190
unsigned nhalo_node()
Total number of halo nodes in this Mesh.
Definition: mesh.h:1878
void add_external_halo_node_pt(const unsigned &p, Node *&nod_pt)
Add external halo node whose non-halo (external) counterpart is held on processor p to the storage sc...
Definition: mesh.h:2368
unsigned nhaloed_node()
Total number of haloed nodes in this Mesh.
Definition: mesh.h:1985
unsigned nexternal_haloed_node()
Total number of external haloed nodes in this Mesh.
Definition: mesh.h:2412
unsigned long nelement() const
Return number of elements in the mesh.
Definition: mesh.h:590
unsigned nexternal_halo_element()
Total number of external halo elements in this Mesh.
Definition: mesh.h:2222
unsigned nroot_halo_element()
Total number of root halo elements in this Mesh.
Definition: mesh.h:1830
Nodes are derived from Data, but, in addition, have a definite (Eulerian) position in a space of a gi...
Definition: nodes.h:906
double & x(const unsigned &i)
Return the i-th nodal coordinate.
Definition: nodes.h:1060
unsigned ndim() const
Return (Eulerian) spatial dimension of the node.
Definition: nodes.h:1054
void set_hanging_pt(HangInfo *const &hang_pt, const int &i)
Set the hanging data for the i-th value. (hang_pt=0 to make non-hanging)
Definition: nodes.cc:2068
An oomph-lib wrapper to the MPI_Comm communicator object. Just contains an MPI_Comm object (which is ...
Definition: communicator.h:54
An OomphLibError object which should be thrown when an run-time error is encountered....
/////////////////////////////////////////////////////////////////// /////////////////////////////////...
////////////////////////////////////////////////////////////////// //////////////////////////////////...
Definition: problem.h:154
OomphCommunicator * communicator_pt()
access function to the oomph-lib communicator
Definition: problem.h:1266
bool problem_has_been_distributed()
Access to Problem_has_been_distributed flag.
Definition: problem.h:2283
TimeStepper *& time_stepper_pt()
Access function for the pointer to the first (presumably only) timestepper.
Definition: problem.h:1544
/////////////////////////////////////////////////////////////////// /////////////////////////////////...
Definition: Qelements.h:91
double & s_macro_ll(const unsigned &i)
Access fct to the i-th coordinate of the element's "lower left" vertex in the associated MacroElement...
Definition: Qelements.h:186
double & s_macro_ur(const unsigned &i)
Access fct to the i-th coordinate of the element's "upper right" vertex in the associated MacroElemen...
Definition: Qelements.h:202
RefineableElements are FiniteElements that may be subdivided into children to provide a better local ...
A Class for nodes that deform elastically (i.e. position is an unknown in the problem)....
Definition: nodes.h:1686
Data *const & variable_position_pt() const
Pointer to variable_position data (const version)
Definition: nodes.h:1765
////////////////////////////////////////////////////////////////////// //////////////////////////////...
Definition: timesteppers.h:231
unsigned ntstorage() const
Return the number of doubles required to represent history (one for steady)
Definition: timesteppers.h:601
bool Doc_full_stats
Boolean to indicate whether to output further info during setup_multi_domain_interaction() routines.
void add_external_halo_node_helper(Node *&new_nod_pt, Mesh *const &mesh_pt, unsigned &loc_p, unsigned &node_index, FiniteElement *const &new_el_pt, int &n_cont_inter_values, unsigned &counter_for_recv_unsigneds, Vector< unsigned > &recv_unsigneds, unsigned &counter_for_recv_doubles, Vector< double > &recv_doubles)
Helper functiono to add external halo node that is not a master.
bool Doc_stats
Boolean to indicate whether to output basic info during setup_multi_domain_interaction() routines.
bool Doc_timings
Boolean to indicate whether to doc timings or not.
Vector< int > Proc_id_plus_one_of_external_element
Proc_id_plus_one_of_external_element[i] contains the processor id (plus one) of the processor on whic...
Definition: multi_domain.cc:91
Vector< double > Flat_packed_located_coordinates
Vector of flat-packed local coordinates for zeta tuples that have been located.
void send_and_receive_located_info(int &iproc, Mesh *const &external_mesh_pt, Problem *problem_pt)
Send location information from current process; Received location information from (current process +...
unsigned Counter_for_flat_packed_unsigneds
Counter used when processing vector of flat-packed unsigneds – this is really "private" data,...
Vector< Vector< unsigned > > External_element_located
Lookup scheme for whether a local element's integration point has had an external element assigned to...
Definition: multi_domain.cc:68
unsigned Dim
Dimension of zeta tuples (set by get_dim_helper) – needed because we store the scalar coordinates in ...
Definition: multi_domain.cc:60
Vector< double > Flat_packed_doubles
Vector of flat-packed doubles to be communicated with other processors.
void send_and_receive_missing_zetas(Problem *problem_pt)
Send the zeta coordinates from the current process to the next process; receive from the previous pro...
void setup_bulk_elements_adjacent_to_face_mesh(Problem *problem_pt, Vector< unsigned > &boundary_in_bulk_mesh, Mesh *const &bulk_mesh_pt, Vector< Mesh * > &face_mesh_pt, const unsigned &interaction=0)
Identify the FaceElements (stored in the mesh pointed to by face_mesh_pt) that are adjacent to the bu...
void clean_up()
Helper function that clears all the information used during the external storage creation.
void setup_multi_domain_interactions(Problem *problem_pt, Mesh *const &first_mesh_pt, Mesh *const &second_mesh_pt, const unsigned &first_interaction=0, const unsigned &second_interaction=0)
Set up the two-way multi-domain interactions for the problem pointed to by problem_pt....
Vector< unsigned > Flat_packed_unsigneds
Vector of flat-packed unsigneds to be communicated with other processors – this is really "private" d...
void add_external_halo_node_to_storage(Node *&new_nod_pt, Mesh *const &external_mesh_pt, unsigned &loc_p, unsigned &node_index, FiniteElement *const &new_el_pt, int &n_cont_inter_values, Problem *problem_pt)
Helper function to add external halo nodes, including any masters, based on information received from...
void get_dim_helper(Problem *problem_pt, Mesh *const &mesh_pt, Mesh *const &external_mesh_pt)
Helper function that computes the dimension of the elements within each of the specified meshes (and ...
std::ofstream Doc_boundary_coordinate_file
Output file to document the boundary coordinate along the mesh boundary of the bulk mesh during call ...
Definition: multi_domain.cc:47
Vector< double > Flat_packed_zetas_not_found_locally
Vector of flat-packed zeta coordinates for which the external element could not be found during curre...
Definition: multi_domain.cc:74
void recursively_add_masters_of_external_halo_node_to_storage(Node *&new_nod_pt, Mesh *const &external_mesh_pt, unsigned &loc_p, unsigned &node_index, FiniteElement *const &new_el_pt, int &n_cont_inter_values, Problem *problem_pt)
Recursively add masters of external halo nodes (and their masters, etc) based on information received...
void locate_zeta_for_local_coordinates(const Vector< Mesh * > &mesh_pt, Mesh *const &external_mesh_pt, Vector< MeshAsGeomObject * > &mesh_geom_obj_pt, const unsigned &interaction_index)
locate zeta for current set of "local" coordinates vector-based version
void construct_new_external_halo_master_node_helper(Node *&new_master_nod_pt, Node *&nod_pt, unsigned &loc_p, Mesh *const &external_mesh_pt, Problem *problem_pt)
Helper function which constructs a new external halo master node with the information sent from the h...
void create_external_halo_elements(int &iproc, const Vector< Mesh * > &mesh_pt, Mesh *const &external_mesh_pt, Problem *problem_pt, const unsigned &interaction_index)
Create external (halo) elements on the loop process based on the information received from each locat...
void add_external_halo_master_node_helper(Node *&new_master_nod_pt, Node *&new_nod_pt, Mesh *const &external_mesh_pt, unsigned &loc_p, int &n_cont_inter_values, Problem *problem_pt)
Helper function to add external halo node that is a master.
bool Use_bulk_element_as_external
Boolean to indicate when to use the bulk element as the external element. Defaults to false,...
void setup_multi_domain_interaction(Problem *problem_pt, Mesh *const &mesh_pt, Mesh *const &external_mesh_pt, const unsigned &interaction_index=0)
Function to set up the one-way multi-domain interaction for problems where the meshes pointed to by m...
void aux_setup_multi_domain_interaction(Problem *problem_pt, Mesh *const &mesh_pt, Mesh *const &external_mesh_pt, const unsigned &interaction_index, Mesh *const &external_face_mesh_pt=0)
Auxiliary helper function.
Vector< unsigned > Located_element_status
Vector to indicate (to another processor) whether a located element (that will have to represented as...
Definition: multi_domain.cc:98
unsigned Counter_for_flat_packed_doubles
Counter used when processing vector of flat-packed doubles – this is really "private" data,...
void locate_zeta_for_missing_coordinates(int &iproc, Mesh *const &external_mesh_pt, Problem *problem_pt, Vector< MeshAsGeomObject * > &mesh_geom_obj_pt)
Locate zeta for current set of missing coordinates; vector-based version.
bool Accept_failed_locate_zeta_in_setup_multi_domain_interaction
Boolean to indicate that failure in setup multi domain functions is acceptable; defaults to false....
Definition: multi_domain.cc:56
double timer()
returns the time in seconds after some point in past
//////////////////////////////////////////////////////////////////// ////////////////////////////////...
OomphInfo oomph_info
Single (global) instantiation of the OomphInfo object – this is used throughout the library as a "rep...