discontinuous_galerkin_spacetime_navier_stokes_elements.h
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26 // Header file for SpaceTimeNavierStokes elements
27 #ifndef OOMPH_DISCONTINUOUS_GALERKIN_SPACETIME_NAVIER_STOKES_ELEMENTS_HEADER
28 #define OOMPH_DISCONTINUOUS_GALERKIN_SPACETIME_NAVIER_STOKES_ELEMENTS_HEADER
29 
30 // Config header generated by autoconfig
31 #ifdef HAVE_CONFIG_H
32 #include <oomph-lib-config.h>
33 #endif
34 
35 // Oomph-lib headers
36 #include "generic.h"
37 
38 namespace oomph
39 {
40  //======================================================================
41  /// Helper class for elements that impose Robin boundary conditions
42  /// on pressure advection diffusion problem required by Fp preconditioner
43  /// (class used to get around some templating issues)
44  //======================================================================
45  class FpPressureAdvDiffRobinBCSpaceTimeElementBase
46  : public virtual FaceElement
47  {
48  public:
49  /// Constructor
51 
52  /// Empty virtual destructor
54 
55  /// This function returns the residuals for the traction
56  /// function. If compute_jacobian_flag=1 (or 0): do (or don't) compute
57  /// the Jacobian as well.
59  Vector<double>& residuals,
60  DenseMatrix<double>& jacobian,
61  const unsigned& compute_jacobian_flag) = 0;
62  };
63 
64  /// ////////////////////////////////////////////////////////////////////
65  /// ////////////////////////////////////////////////////////////////////
66  /// ////////////////////////////////////////////////////////////////////
67 
68  //======================================================================
69  /// A class for elements that allow the imposition of Robin boundary
70  /// conditions for the pressure advection diffusion problem in the
71  /// Fp preconditioner.
72  /// The geometrical information can be read from the FaceGeometry<ELEMENT>
73  /// class and and thus, we can be generic enough without the need to have
74  /// a separate equations class
75  //======================================================================
76  template<class ELEMENT>
78  : public virtual FaceGeometry<ELEMENT>,
79  public virtual FaceElement,
81  {
82  public:
83  /// Constructor, which takes a "bulk" element and the value of the
84  /// index and its limit. Optional boolean flag indicates if it's called
85  /// refineable constructor.
87  FiniteElement* const& element_pt,
88  const int& face_index,
89  const bool& called_from_refineable_constructor = false)
90  : FaceGeometry<ELEMENT>(), FaceElement()
91  {
92  // Attach the geometrical information to the element. N.B. This function
93  // also assigns nbulk_value from the required_nvalue of the bulk element
94  element_pt->build_face_element(face_index, this);
95 
96 #ifdef PARANOID
97  // Check that the element is not a refineable 3D element
98  if (!called_from_refineable_constructor)
99  {
100  // If it's a three-dimensional element
101  if (element_pt->dim() == 3)
102  {
103  // Upcast the element to a RefineableElement
104  RefineableElement* ref_el_pt =
105  dynamic_cast<RefineableElement*>(element_pt);
106 
107  // Is it actually refineable?
108  if (ref_el_pt != 0)
109  {
110  // If it is refineable then check if it has any hanging nodes
111  if (this->has_hanging_nodes())
112  {
113  // Create an output stream
114  std::ostringstream error_message_stream;
115 
116  // Create an error message
117  error_message_stream
118  << "This flux element will not work correctly "
119  << "if nodes are hanging!" << std::endl;
120 
121  // Throw an error message
122  throw OomphLibError(error_message_stream.str(),
123  OOMPH_CURRENT_FUNCTION,
124  OOMPH_EXCEPTION_LOCATION);
125  }
126  } // if (ref_el_pt!=0)
127  } // if (element_pt->dim()==3)
128  } // if (!called_from_refineable_constructor)
129 #endif
130  } // End of FpPressureAdvDiffRobinBCSpaceTimeElement
131 
132 
133  /// Empty destructor
135 
136 
137  /// This function returns the residuals for the traction
138  /// function. flag=1 (or 0): do (or don't) compute the Jacobian
139  /// as well.
141  Vector<double>& residuals,
142  DenseMatrix<double>& jacobian,
143  const unsigned& flag);
144 
145 
146  /// This function returns just the residuals
148  {
149  // Create an output stream
150  std::ostringstream error_message;
151 
152  // Create an error message
153  error_message << "fill_in_contribution_to_residuals() must not be "
154  << "called directly.\nsince it uses the local equation "
155  << "numbering of the bulk element\nwhich calls the "
156  << "relevant helper function directly." << std::endl;
157 
158  // Throw an error
159  throw OomphLibError(
160  error_message.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
161  } // End of fill_in_contribution_to_residuals
162 
163 
164  /// This function returns the residuals and the jacobian
166  DenseMatrix<double>& jacobian)
167  {
168  // Create an output stream
169  std::ostringstream error_message;
170 
171  // Create an error message
172  error_message << "fill_in_contribution_to_jacobian() must not be "
173  << "called directly.\nsince it uses the local equation "
174  << "numbering of the bulk element\nwhich calls the "
175  << "relevant helper function directly." << std::endl;
176 
177  // Throw an error
178  throw OomphLibError(
179  error_message.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
180  } // End of fill_in_contribution_to_jacobian
181 
182 
183  /// Overload the output function
184  void output(std::ostream& outfile)
185  {
186  // Call the output function from the FiniteElement base class
187  FiniteElement::output(outfile);
188  } // End of output
189 
190 
191  /// Output function: x,y,[z],u,v,[w],p in tecplot format
192  void output(std::ostream& outfile, const unsigned& nplot)
193  {
194  // Call the output function from the FiniteElement base class
195  FiniteElement::output(outfile, nplot);
196  } // End of output
197  };
198 
199  /// ////////////////////////////////////////////////////////////////////
200  /// ////////////////////////////////////////////////////////////////////
201  /// ////////////////////////////////////////////////////////////////////
202 
203  //============================================================================
204  /// Get residuals and Jacobian of Robin boundary conditions in pressure
205  /// advection diffusion problem in Fp preconditoner
206  /// NOTE: Care has to be taken here as fluxes are spatially dependent and
207  /// not temporally dependent but the template elements are space-time
208  /// elements!
209  //============================================================================
210  template<class ELEMENT>
213  Vector<double>& residuals,
214  DenseMatrix<double>& jacobian,
215  const unsigned& flag)
216  {
217  // Throw a warning
218  throw OomphLibError("You shouldn't be using this just yet!",
219  OOMPH_CURRENT_FUNCTION,
220  OOMPH_EXCEPTION_LOCATION);
221 
222  // Get the dimension of the element
223  // DRAIG: Should be 2 as bulk (space-time) element is 3D...
224  unsigned my_dim = this->dim();
225 
226  // Storage for local coordinates in FaceElement
227  Vector<double> s(my_dim, 0.0);
228 
229  // Storage for local coordinates in the associated bulk element
230  Vector<double> s_bulk(my_dim + 1, 0.0);
231 
232  // Storage for outer unit normal
233  // DRAIG: Need to be careful here...
234  Vector<double> unit_normal(my_dim + 1, 0.0);
235 
236  // Storage for velocity in bulk element
237  // DRAIG: Need to be careful here...
238  Vector<double> velocity(my_dim, 0.0);
239 
240  // Set the value of n_intpt
241  unsigned n_intpt = this->integral_pt()->nweight();
242 
243  // Integer to store local equation number
244  int local_eqn = 0;
245 
246  // Integer to store local unknown number
247  int local_unknown = 0;
248 
249  // Get upcast bulk element
250  ELEMENT* bulk_el_pt = dynamic_cast<ELEMENT*>(this->bulk_element_pt());
251 
252  // Find out how many pressure dofs there are in the bulk element
253  unsigned n_pres = bulk_el_pt->npres_nst();
254 
255  // Get the Reynolds number from the bulk element
256  double re = bulk_el_pt->re();
257 
258  // Set up memory for pressure shape functions
259  Shape psip(n_pres);
260 
261  // Set up memory for pressure test functions
262  Shape testp(n_pres);
263 
264  // Loop over the integration points
265  for (unsigned ipt = 0; ipt < n_intpt; ipt++)
266  {
267  // Get the integral weight
268  double w = this->integral_pt()->weight(ipt);
269 
270  // Assign values of local coordinate in FaceElement
271  for (unsigned i = 0; i < my_dim; i++)
272  {
273  // Get the i-th local coordinate at this knot point
274  s[i] = this->integral_pt()->knot(ipt, i);
275  }
276 
277  // Find corresponding coordinate in the bulk element
278  s_bulk = this->local_coordinate_in_bulk(s);
279 
280  // Get outer unit normal
281  // DRAIG: Make sure the normal is calculated properly; i.e.
282  // the normal needs to be calculated in the spatial direction
283  // and NOT in the temporal direction!!!
284  this->outer_unit_normal(ipt, unit_normal);
285 
286  // Get velocity in bulk element
287  bulk_el_pt->interpolated_u_nst(s_bulk, velocity);
288 
289  // Get normal component of velocity
290  double flux = 0.0;
291 
292  // Loop over the velocity components
293  for (unsigned i = 0; i < my_dim; i++)
294  {
295  // Update the flux quantity
296  flux += velocity[i] * unit_normal[i];
297  }
298 
299  // Modify BC: If outflow (flux>0) apply Neumann condition instead
300  if (flux > 0.0)
301  {
302  // Apply no flux condition
303  flux = 0.0;
304  }
305 
306  // Get the pressure at these local coordinates
307  double interpolated_press = bulk_el_pt->interpolated_p_nst(s_bulk);
308 
309  // Call the pressure shape and test functions in bulk element
310  bulk_el_pt->pshape_nst(s_bulk, psip, testp);
311 
312  // Find the Jacobian of the mapping within the FaceElement
313  double J = this->J_eulerian(s);
314 
315  // Premultiply the weights and the Jacobian
316  double W = w * J;
317 
318  // Loop over the pressure shape functions in bulk
319  // (wasteful but they'll be zero on the boundary)
320  for (unsigned l = 0; l < n_pres; l++)
321  {
322  // Get the local equation number associated with this pressure dof
323  local_eqn = bulk_el_pt->p_local_eqn(l);
324 
325  // If it's not a boundary condition
326  if (local_eqn >= 0)
327  {
328  // Update the residuals
329  residuals[local_eqn] -= re * flux * interpolated_press * testp[l] * W;
330 
331  // If the Jacobian needs to be computed too
332  if (flag)
333  {
334  // Loop over the shape functions in bulk
335  for (unsigned l2 = 0; l2 < n_pres; l2++)
336  {
337  // Get the equation number associated with this pressure dof
338  local_unknown = bulk_el_pt->p_local_eqn(l2);
339 
340  // If it's not a boundary condition
341  if (local_unknown >= 0)
342  {
343  // Update the appropriate Jacobian entry
344  jacobian(local_eqn, local_unknown) -=
345  re * flux * psip[l2] * testp[l] * W;
346  }
347  } // for (unsigned l2=0;l2<n_pres;l2++)
348  } // if (flag)
349  } // if (local_eqn>=0)
350  } // for (unsigned l=0;l<n_pres;l++)
351  } // for (unsigned ipt=0;ipt<n_intpt;ipt++)
352  } // End of fill_in_generic_residual_contribution_fp_press_adv_diff_robin_bc
353 
354  /// ////////////////////////////////////////////////////////////////////
355  /// ////////////////////////////////////////////////////////////////////
356  /// ////////////////////////////////////////////////////////////////////
357 
358  //======================================================================
359  /// Template-free base class for Navier-Stokes equations to avoid
360  /// casting problems
361  //======================================================================
362  class TemplateFreeSpaceTimeNavierStokesEquationsBase
363  : public virtual NavierStokesElementWithDiagonalMassMatrices,
364  public virtual FiniteElement
365  {
366  public:
367  /// Constructor (empty)
369 
370 
371  /// Virtual destructor (empty)
373 
374 
375  /// Compute the residuals for the associated pressure advection
376  /// diffusion problem. Used by the Fp preconditioner.
378  Vector<double>& residuals) = 0;
379 
380 
381  /// Compute the residuals and Jacobian for the associated
382  /// pressure advection diffusion problem. Used by the Fp preconditioner.
384  Vector<double>& residuals, DenseMatrix<double>& jacobian) = 0;
385 
386 
387  /// Return the index at which the pressure is stored if it is
388  /// stored at the nodes. If not stored at the nodes this will return
389  /// a negative number.
390  virtual int p_nodal_index_nst() const = 0;
391 
392 
393  /// Access function for the local equation number information for
394  /// the pressure.
395  /// p_local_eqn[n] = local equation number or < 0 if pinned
396  virtual int p_local_eqn(const unsigned& n) const = 0;
397 
398 
399  /// Global eqn number of pressure dof that's pinned in pressure
400  /// adv diff problem
401  virtual int& pinned_fp_pressure_eqn() = 0;
402 
403 
404  /// Pin all non-pressure dofs and backup eqn numbers of all Data
406  std::map<Data*, std::vector<int>>& eqn_number_backup) = 0;
407 
408 
409  /// Build FaceElements that apply the Robin boundary condition
410  /// to the pressure advection diffusion problem required by
411  /// Fp preconditioner
413  const unsigned& face_index) = 0;
414 
415 
416  /// Delete the FaceElements that apply the Robin boundary condition
417  /// to the pressure advection diffusion problem required by
418  /// Fp preconditioner
420 
421 
422  /// Compute the diagonal of the velocity/pressure mass matrices.
423  /// If which one=0, both are computed, otherwise only the pressure
424  /// (which_one=1) or the velocity mass matrix (which_one=2 -- the
425  /// LSC version of the preconditioner only needs that one)
427  Vector<double>& press_mass_diag,
428  Vector<double>& veloc_mass_diag,
429  const unsigned& which_one = 0) = 0;
430  };
431 
432  /// ////////////////////////////////////////////////////////////////////
433  /// ////////////////////////////////////////////////////////////////////
434  /// ////////////////////////////////////////////////////////////////////
435 
436  //======================================================================
437  /// A class for elements that solve the Cartesian Navier-Stokes
438  /// equations, templated by the dimension DIM.
439  /// This contains the generic maths -- any concrete implementation must
440  /// be derived from this.
441  ///
442  /// We're solving:
443  ///
444  /// \f$ { Re \left( St \frac{\partial u_i}{\partial t}+ (u_j-u_j^{M}) \frac{\partial u_i}{\partial x_j} \right)= -\frac{\partial p}{\partial x_i} -R_\rho B_i(x_j) - \frac{Re}{Fr} G_i + \frac{\partial }{\partial x_j} \left[ R_\mu \left( \frac{\partial u_i}{\partial x_j}+ \frac{\partial u_j}{\partial x_i} \right) \right] } \f$
445  ///
446  /// and
447  ///
448  /// \f$ { \frac{\partial u_i}{\partial x_i}=Q } \f$
449  ///
450  /// We also provide all functions required to use this element
451  /// in FSI problems, by deriving it from the FSIFluidElement base
452  /// class.
453  ///
454  /// --------------------
455  /// SPACE-TIME ELEMENTS:
456  /// --------------------
457  /// The space-time extension is written ONLY for the 2D Navier-Stokes
458  /// equations. The result is a 3D problem (x,y,t) to be solved on a
459  /// 3D mesh. The template parameter DIM now corresponds to the
460  /// dimension of the space-time problem (i.e. DIM=3 for the 2D flow).
461  //======================================================================
462  template<unsigned DIM>
464  : public virtual FSIFluidElement,
466  {
467  public:
468  /// Function pointer to body force function fct(t,x,f(x))
469  /// x is a Vector!
470  typedef void (*NavierStokesBodyForceFctPt)(const double& time,
471  const Vector<double>& x,
472  Vector<double>& body_force);
473 
474  /// Function pointer to source function fct(t,x) (x is a Vector!)
475  typedef double (*NavierStokesSourceFctPt)(const double& time,
476  const Vector<double>& x);
477 
478  /// Function pointer to source function fct(x) for the
479  /// pressure advection diffusion equation (only used during
480  /// validation!). x is a Vector!
482  const Vector<double>& x);
483 
484  private:
485  /// Static "magic" number that indicates that the pressure is
486  /// not stored at a node
487  static int Pressure_not_stored_at_node;
488 
489  /// Static default value for the physical constants (all initialised to
490  /// zero)
491  static double Default_Physical_Constant_Value;
492 
493  /// Static default value for the physical ratios (all are initialised to
494  /// one)
495  static double Default_Physical_Ratio_Value;
496 
497  /// Static default value for the gravity vector
499 
500  protected:
501  // Physical constants:
502 
503  /// Pointer to the viscosity ratio (relative to the
504  /// viscosity used in the definition of the Reynolds number)
505  double* Viscosity_Ratio_pt;
506 
507  /// Pointer to the density ratio (relative to the density used in the
508  /// definition of the Reynolds number)
509  double* Density_Ratio_pt;
510 
511  // Pointers to global physical constants:
512 
513  /// Pointer to global Reynolds number
514  double* Re_pt;
515 
516  /// Pointer to global Reynolds number x Strouhal number (=Womersley)
517  double* St_pt;
518 
519  /// Boolean to indicate whether or not the Strouhal value is
520  /// stored as external data (if it's also an unknown of the problem)
522 
523  /// Pointer to global Reynolds number x inverse Froude number
524  /// (= Bond number / Capillary number)
525  double* ReInvFr_pt;
526 
527  /// Pointer to global gravity Vector
529 
530  /// Pointer to body force function
532 
533  /// Pointer to volumetric source function
535 
536  /// Pointer to source function pressure advection diffusion equation
537  /// (only to be used during validation)
539 
540  /// Boolean flag to indicate if ALE formulation is disabled when
541  /// time-derivatives are computed. Only set to true if you're sure
542  /// that the mesh is stationary.
543  bool ALE_is_disabled;
544 
545  /// Storage for FaceElements that apply Robin BC for pressure adv
546  /// diff equation used in Fp preconditioner.
549 
550  /// Global eqn number of pressure dof that's pinned in
551  /// pressure advection diffusion problem (defaults to -1)
553 
554 
555  /// Compute the shape functions and derivatives
556  /// w.r.t. global coords at local coordinate s.
557  /// Return Jacobian of mapping between local and global coordinates.
559  Shape& psi,
560  DShape& dpsidx,
561  Shape& test,
562  DShape& dtestdx) const = 0;
563 
564 
565  /// Compute the shape functions and derivatives
566  /// w.r.t. global coords at ipt-th integration point
567  /// Return Jacobian of mapping between local and global coordinates.
569  const unsigned& ipt,
570  Shape& psi,
571  DShape& dpsidx,
572  Shape& test,
573  DShape& dtestdx) const = 0;
574 
575 
576  /// Shape/test functions and derivs w.r.t. to global coords at
577  /// integration point ipt; return Jacobian of mapping (J). Also compute
578  /// derivatives of dpsidx, dtestdx and J w.r.t. nodal coordinates.
580  const unsigned& ipt,
581  Shape& psi,
582  DShape& dpsidx,
583  RankFourTensor<double>& d_dpsidx_dX,
584  Shape& test,
585  DShape& dtestdx,
586  RankFourTensor<double>& d_dtestdx_dX,
587  DenseMatrix<double>& djacobian_dX) const = 0;
588 
589 
590  /// Pressure shape functions and their derivs w.r.t. to global coords
591  /// at local coordinate s (taken from geometry). Return Jacobian of mapping
592  /// between local and global coordinates.
593  virtual double dpshape_eulerian(const Vector<double>& s,
594  Shape& ppsi,
595  DShape& dppsidx) const = 0;
596 
597 
598  /// Pressure test functions and their derivs w.r.t. to global coords
599  /// at local coordinate s (taken from geometry). Return Jacobian of mapping
600  /// between local and global coordinates.
601  virtual double dptest_eulerian(const Vector<double>& s,
602  Shape& ptest,
603  DShape& dptestdx) const = 0;
604 
605 
606  /// Compute the pressure shape and test functions and derivatives
607  /// w.r.t. global coords at local coordinate s.
608  /// Return Jacobian of mapping between local and global coordinates.
610  Shape& ppsi,
611  DShape& dppsidx,
612  Shape& ptest,
613  DShape& dptestdx) const = 0;
614 
615 
616  /// Calculate the body force at a given time and local and/or
617  /// Eulerian position. This function is virtual so that it can be
618  /// overloaded in multi-physics elements where the body force might
619  /// depend on another variable.
620  virtual void get_body_force_nst(const double& time,
621  const unsigned& ipt,
622  const Vector<double>& s,
623  const Vector<double>& x,
624  Vector<double>& result)
625  {
626  // If a function has not been provided
627  if (Body_force_fct_pt == 0)
628  {
629  // Set the body forces to zero
630  result.initialise(0.0);
631  }
632  // If the function pointer is non-zero
633  else
634  {
635  // Call the function
636  (*Body_force_fct_pt)(time, x, result);
637  } // if (Body_force_fct_pt!=0)
638  } // End of get_body_force_nst
639 
640 
641  /// Get gradient of body force term at (Eulerian) position x. This function
642  /// is virtual to allow overloading in multi-physics problems where
643  /// the strength of the source function might be determined by another
644  /// system of equations. Computed via function pointer (if set) or by
645  /// finite differencing (default)
646  inline virtual void get_body_force_gradient_nst(
647  const double& time,
648  const unsigned& ipt,
649  const Vector<double>& s,
650  const Vector<double>& x,
651  DenseMatrix<double>& d_body_force_dx)
652  {
653  // Reference value
654  Vector<double> body_force(DIM, 0.0);
655 
656  // Get the body force vector
657  get_body_force_nst(time, ipt, s, x, body_force);
658 
659  // Get the finite-difference step size
661 
662  // The body force computed at the perturbed coordinates
663  Vector<double> body_force_pls(DIM, 0.0);
664 
665  // Copy the (Eulerian) coordinate vector x
666  Vector<double> x_pls(x);
667 
668  // Loop over the coordinate directions
669  for (unsigned i = 0; i < DIM; i++)
670  {
671  // Update the i-th entry
672  x_pls[i] += eps_fd;
673 
674  // Get the body force at the current time
675  get_body_force_nst(time, ipt, s, x_pls, body_force_pls);
676 
677  // Loop over the coordinate directions
678  for (unsigned j = 0; j < DIM; j++)
679  {
680  // Finite-difference the body force derivative
681  d_body_force_dx(j, i) = (body_force_pls[j] - body_force[j]) / eps_fd;
682  }
683 
684  // Reset the i-th entry
685  x_pls[i] = x[i];
686  }
687  } // End of get_body_force_gradient_nst
688 
689 
690  /// Calculate the source fct at a given time and Eulerian position
691  virtual double get_source_nst(const double& time,
692  const unsigned& ipt,
693  const Vector<double>& x)
694  {
695  // If the function pointer is null
696  if (Source_fct_pt == 0)
697  {
698  // Set the source function value to zero
699  return 0;
700  }
701  // Otherwise call the function pointer
702  else
703  {
704  // Return the appropriate value
705  return (*Source_fct_pt)(time, x);
706  }
707  } // End of get_source_nst
708 
709 
710  /// Get gradient of source term at (Eulerian) position x. This function
711  /// is virtual to allow overloading in multi-physics problems where the
712  /// strength of the source function might be determined by another system
713  /// of equations. Computed via function pointer (if set) or by finite
714  /// differencing (default)
715  inline virtual void get_source_gradient_nst(const double& time,
716  const unsigned& ipt,
717  const Vector<double>& x,
718  Vector<double>& gradient)
719  {
720  // Reference value
721  double source = get_source_nst(time, ipt, x);
722 
723  // Get the finite-difference step size
725 
726  // The source function value computed at the perturbed coordinates
727  double source_pls = 0.0;
728 
729  // Copy the (Eulerian) coordinate vector, x
730  Vector<double> x_pls(x);
731 
732  // Loop over the coordinate directions
733  for (unsigned i = 0; i < DIM; i++)
734  {
735  // Update the i-th entry
736  x_pls[i] += eps_fd;
737 
738  // Get the body force at the current time
739  source_pls = get_source_nst(time, ipt, x_pls);
740 
741  // Loop over the coordinate directions
742  for (unsigned j = 0; j < DIM; j++)
743  {
744  // Finite-difference the source function gradient
745  gradient[i] = (source_pls - source) / eps_fd;
746  }
747 
748  // Reset the i-th entry
749  x_pls[i] = x[i];
750  }
751  } // End of get_source_gradient_nst
752 
753 
754  /// Compute the residuals for the Navier-Stokes equations.
755  /// Flag=1 (or 0): do (or don't) compute the Jacobian as well.
756  /// Flag=2: Fill in mass matrix too.
758  Vector<double>& residuals,
759  DenseMatrix<double>& jacobian,
760  DenseMatrix<double>& mass_matrix,
761  const unsigned& flag);
762 
763 
764  /// Compute the residuals for the associated pressure advection
765  /// diffusion problem. Used by the Fp preconditioner.
766  /// flag=1(or 0): do (or don't) compute the Jacobian as well.
768  Vector<double>& residuals,
769  DenseMatrix<double>& jacobian,
770  const unsigned& flag);
771 
772 
773  /// Compute the derivatives of the
774  /// residuals for the Navier-Stokes equations with respect to a parameter
775  /// Flag=1 (or 0): do (or don't) compute the Jacobian as well.
776  /// Flag=2: Fill in mass matrix too.
778  double* const& parameter_pt,
779  Vector<double>& dres_dparam,
780  DenseMatrix<double>& djac_dparam,
781  DenseMatrix<double>& dmass_matrix_dparam,
782  const unsigned& flag);
783 
784 
785  /// Compute the hessian tensor vector products required to
786  /// perform continuation of bifurcations analytically
788  Vector<double> const& Y,
789  DenseMatrix<double> const& C,
790  DenseMatrix<double>& product);
791 
792  public:
793  /// Constructor: NULL the body force and source function
794  /// and make sure the ALE terms are included by default.
796  : Body_force_fct_pt(0),
797  Source_fct_pt(0),
799  ALE_is_disabled(false),
801  {
802  // Set all the Physical parameter pointers:
803 
804  // Set the Reynolds number to the value zero
806 
807  // Set the Strouhal number to the value zero
809 
810  // The Strouhal number (which is a proxy for the period here) is not
811  // stored as external data
813 
814  // Set the Reynolds / Froude value to zero
816 
817  // Set the gravity vector to be the zero vector
819 
820  // Set the Physical ratios:
821 
822  // Set the viscosity ratio to the value one
824 
825  // Set the density ratio to the value one
827  }
828 
829  /// Vector to decide whether the stress-divergence form is used or not
830  /// N.B. This needs to be public so that the intel compiler gets things
831  /// correct somehow the access function messes things up when going to
832  /// refineable Navier-Stokes
833  static Vector<double> Gamma;
834 
835 
836  /// Function that tells us whether the period is stored as external data
837  void store_strouhal_as_external_data(Data* strouhal_data_pt)
838  {
839 #ifdef PARANOID
840  // Sanity check; make sure it's not a null pointer
841  if (strouhal_data_pt == 0)
842  {
843  // Create an output stream
844  std::ostringstream error_message_stream;
845 
846  // Create an error message
847  error_message_stream
848  << "User supplied Strouhal number as external data\n"
849  << "but the pointer provided is a null pointer!" << std::endl;
850 
851  // Throw an error
852  throw OomphLibError(error_message_stream.str(),
853  OOMPH_CURRENT_FUNCTION,
854  OOMPH_EXCEPTION_LOCATION);
855  }
856 #endif
857 
858  // Set the Strouhal value pointer (the Strouhal number is stored as the
859  // only piece of internal data in the phase condition element)
860  this->add_external_data(strouhal_data_pt);
861 
862  // Indicate that the Strouhal number is store as external data
864  } // End of store_strouhal_as_external_data
865 
866 
867  // Access functions for the physical constants:
868 
869  /// Reynolds number
870  const double& re() const
871  {
872  // Use the Reynolds number pointer to get the Reynolds value
873  return *Re_pt;
874  } // End of re
875 
876 
877  /// Pointer to Reynolds number
878  double*& re_pt()
879  {
880  // Return the Reynolds number pointer
881  return Re_pt;
882  } // End of re_pt
883 
884 
885  /// Are we storing the Strouhal number as external data?
887  {
888  // Return the flags value
890  } // End of is_strouhal_stored_as_external_data
891 
892 
893  /// Strouhal parameter (const. version)
894  const double& st() const
895  {
896  // If the st is stored as external data
898  {
899  // The index of the external data (which contains the st)
900  unsigned data_index = 0;
901 
902  // The index of the value at which the Strouhal is stored
903  unsigned strouhal_index = 0;
904 
905  // Return the value of the st in the external data
906  return *(this->external_data_pt(data_index)->value_pt(strouhal_index));
907  }
908  // Otherwise the st is just stored as a pointer
909  else
910  {
911  // Return the value of St
912  return *St_pt;
913  }
914  } // End of st
915 
916 
917  /// Pointer to Strouhal parameter (const. version)
918  double* st_pt() const
919  {
920  // If the strouhal is stored as external data
922  {
923  // The index of the external data (which contains the strouhal)
924  unsigned data_index = 0;
925 
926  // The index of the value at which the strouhal is stored (the only
927  // value)
928  unsigned strouhal_index = 0;
929 
930  // Return the value of the strouhal in the external data
931  return this->external_data_pt(data_index)->value_pt(strouhal_index);
932  }
933  // Otherwise the strouhal is just stored as a pointer
934  else
935  {
936  // Return the value of Strouhal
937  return St_pt;
938  }
939  } // End of st_pt
940 
941 
942  /// Pointer to Strouhal number (can only assign to private member data)
943  double*& st_pt()
944  {
945  // Return the Strouhal number pointer
946  return St_pt;
947  } // End of st_pt
948 
949 
950  /// Product of Reynolds and Strouhal number (=Womersley number)
951  double re_st() const
952  {
953  // Return the product of the appropriate physical constants
954  return (*Re_pt) * (*st_pt());
955  } // End of re_st
956 
957 
958  /// Viscosity ratio for element: Element's viscosity relative to the
959  /// viscosity used in the definition of the Reynolds number
960  const double& viscosity_ratio() const
961  {
962  return *Viscosity_Ratio_pt;
963  }
964 
965  /// Pointer to Viscosity Ratio
967  {
968  return Viscosity_Ratio_pt;
969  }
970 
971  /// Density ratio for element: Element's density relative to the
972  /// viscosity used in the definition of the Reynolds number
973  const double& density_ratio() const
974  {
975  return *Density_Ratio_pt;
976  }
977 
978  /// Pointer to Density ratio
979  double*& density_ratio_pt()
980  {
981  return Density_Ratio_pt;
982  }
983 
984  /// Global inverse Froude number
985  const double& re_invfr() const
986  {
987  return *ReInvFr_pt;
988  }
989 
990  /// Pointer to global inverse Froude number
991  double*& re_invfr_pt()
992  {
993  return ReInvFr_pt;
994  }
995 
996  /// Vector of gravitational components
997  const Vector<double>& g() const
998  {
999  return *G_pt;
1000  }
1001 
1002  /// Pointer to Vector of gravitational components
1004  {
1005  return G_pt;
1006  }
1007 
1008  /// Access function for the body-force pointer
1010  {
1011  return Body_force_fct_pt;
1012  }
1013 
1014  /// Access function for the body-force pointer. Const version
1016  {
1017  return Body_force_fct_pt;
1018  }
1019 
1020  /// Access function for the source-function pointer
1022  {
1023  return Source_fct_pt;
1024  }
1025 
1026  /// Access function for the source-function pointer. Const version
1028  {
1029  return Source_fct_pt;
1030  }
1031 
1032  /// Access function for the source-function pointer for pressure
1033  /// advection diffusion (used for validation only).
1035  {
1037  }
1038 
1039  /// Access function for the source-function pointer for pressure
1040  /// advection diffusion (used for validation only). Const version.
1042  const
1043  {
1045  }
1046 
1047  /// Global eqn number of pressure dof that's pinned in pressure
1048  /// adv diff problem
1050  {
1051  // Return the appropriate equation number
1052  return Pinned_fp_pressure_eqn;
1053  }
1054 
1055  /// Function to return number of pressure degrees of freedom
1056  virtual unsigned npres_nst() const = 0;
1057 
1058  /// Compute the pressure shape functions at local coordinate s
1059  virtual void pshape_nst(const Vector<double>& s, Shape& psi) const = 0;
1060 
1061  /// Compute the pressure shape and test functions
1062  /// at local coordinate s
1063  virtual void pshape_nst(const Vector<double>& s,
1064  Shape& psi,
1065  Shape& test) const = 0;
1066 
1067  /// Velocity i at local node n. Uses suitably interpolated value
1068  /// for hanging nodes. The use of u_index_nst() permits the use of this
1069  /// element as the basis for multi-physics elements. The default
1070  /// is to assume that the i-th velocity component is stored at the
1071  /// i-th location of the node
1072  double u_nst(const unsigned& n, const unsigned& i) const
1073  {
1074  return nodal_value(n, u_index_nst(i));
1075  }
1076 
1077  /// Velocity i at local node n at timestep t (t=0: present;
1078  /// t>0: previous). Uses suitably interpolated value for hanging nodes.
1079  double u_nst(const unsigned& t, const unsigned& n, const unsigned& i) const
1080  {
1081 #ifdef PARANOID
1082  // Since we're using space-time elements, this only makes sense if t=0
1083  if (t != 0)
1084  {
1085  // Throw an error
1086  throw OomphLibError("Space-time elements cannot have history values!",
1087  OOMPH_CURRENT_FUNCTION,
1088  OOMPH_EXCEPTION_LOCATION);
1089  }
1090 #endif
1091 
1092  // Return the appropriate nodal value (noting that t=0 here)
1093  return nodal_value(t, n, u_index_nst(i));
1094  } // End of u_nst
1095 
1096  /// Return the index at which the i-th unknown velocity component
1097  /// is stored. The default value, i, is appropriate for single-physics
1098  /// problems.
1099  /// In derived multi-physics elements, this function should be overloaded
1100  /// to reflect the chosen storage scheme. Note that these equations require
1101  /// that the unknowns are always stored at the same indices at each node.
1102  virtual inline unsigned u_index_nst(const unsigned& i) const
1103  {
1104 #ifdef PARANOID
1105  if (i > DIM - 1)
1106  {
1107  // Create an output stream
1108  std::ostringstream error_message_stream;
1109 
1110  // Create an error message
1111  error_message_stream << "Input index " << i << " does not correspond "
1112  << "to a velocity component when DIM=" << DIM
1113  << "!" << std::endl;
1114 
1115  // Throw an error
1116  throw OomphLibError(error_message_stream.str(),
1117  OOMPH_CURRENT_FUNCTION,
1118  OOMPH_EXCEPTION_LOCATION);
1119  }
1120 #endif
1121 
1122  // Return the appropriate entry
1123  return i;
1124  } // End of u_index_nst
1125 
1126 
1127  /// Return the number of velocity components (used in
1128  /// FluidInterfaceElements)
1129  inline unsigned n_u_nst() const
1130  {
1131  // Return the number of equations to solve
1132  return DIM;
1133  } // End of n_u_nst
1134 
1135 
1136  /// i-th component of du/dt at local node n.
1137  /// Uses suitably interpolated value for hanging nodes.
1138  /// NOTE: This is essentially a wrapper for du_dt_nst()
1139  /// so it can be called externally.
1140  double get_du_dt(const unsigned& n, const unsigned& i) const
1141  {
1142  // Return the value calculated by du_dt_vdp
1143  return du_dt_nst(n, i);
1144  } // End of get_du_dt
1145 
1146 
1147  /// i-th component of du/dt at local node n.
1148  /// Uses suitably interpolated value for hanging nodes.
1149  double du_dt_nst(const unsigned& n, const unsigned& i) const
1150  {
1151  // Storage for the local coordinates
1152  Vector<double> s(DIM + 1, 0.0);
1153 
1154  // Get the local coordinate at the n-th node
1156 
1157  // Return the interpolated du_i/dt value
1158  return interpolated_du_dt_nst(s, i);
1159  } // End of du_dt_nst
1160 
1161 
1162  /// Return FE representation of function value du_i/dt(s) at local
1163  /// coordinate s
1165  const unsigned& i) const
1166  {
1167  // Find number of nodes
1168  unsigned n_node = nnode();
1169 
1170  // Local shape function
1171  Shape psi(n_node);
1172 
1173  // Allocate space for the derivatives of the shape functions
1174  DShape dpsidx(n_node, DIM + 1);
1175 
1176  // Compute the geometric shape functions and also first derivatives
1177  // w.r.t. global coordinates at local coordinate s
1178  dshape_eulerian(s, psi, dpsidx);
1179 
1180  // Initialise value of du_i/dt
1181  double interpolated_dudt = 0.0;
1182 
1183  // Find the index at which the variable is stored
1184  unsigned u_nodal_index = u_index_nst(i);
1185 
1186  // Loop over the local nodes and sum
1187  for (unsigned l = 0; l < n_node; l++)
1188  {
1189  // Update the interpolated du_i/dt value
1190  interpolated_dudt += nodal_value(l, u_nodal_index) * dpsidx(l, DIM);
1191  }
1192 
1193  // Return the interpolated du_i/dt value
1194  return interpolated_dudt;
1195  } // End of interpolated_du_dt_nst
1196 
1197 
1198  /// Disable ALE, i.e. assert the mesh is not moving -- you do this
1199  /// at your own risk!
1201  {
1202  ALE_is_disabled = true;
1203  } // End of disable_ALE
1204 
1205 
1206  /// (Re-)enable ALE, i.e. take possible mesh motion into account
1207  /// when evaluating the time-derivative. Note: By default, ALE is
1208  /// enabled, at the expense of possibly creating unnecessary work
1209  /// in problems where the mesh is, in fact, stationary.
1210  void enable_ALE()
1211  {
1212  ALE_is_disabled = false;
1213  } // End of enable_ALE
1214 
1215 
1216  /// Pressure at local pressure "node" n_p
1217  /// Uses suitably interpolated value for hanging nodes.
1218  virtual double p_nst(const unsigned& n_p) const = 0;
1219 
1220  /// Pressure at local pressure "node" n_p at time level t
1221  virtual double p_nst(const unsigned& t, const unsigned& n_p) const = 0;
1222 
1223  /// Pin p_dof-th pressure dof and set it to value specified by p_value.
1224  virtual void fix_pressure(const unsigned& p_dof, const double& p_value) = 0;
1225 
1226  /// Return the index at which the pressure is stored if it is
1227  /// stored at the nodes. If not stored at the nodes this will return
1228  /// a negative number.
1229  virtual int p_nodal_index_nst() const
1230  {
1232  }
1233 
1234  /// Integral of pressure over element
1235  double pressure_integral() const;
1236 
1237  /// Return integral of dissipation over element
1238  double dissipation() const;
1239 
1240  /// Return dissipation at local coordinate s
1241  double dissipation(const Vector<double>& s) const;
1242 
1243  /// Compute the vorticity vector at local coordinate s
1245  Vector<double>& vorticity) const;
1246 
1247  /// Compute the vorticity vector at local coordinate s
1248  void get_vorticity(const Vector<double>& s, double& vorticity) const;
1249 
1250  /// Get integral of kinetic energy over element
1251  double kin_energy() const;
1252 
1253  /// Get integral of time derivative of kinetic energy over element
1254  double d_kin_energy_dt() const;
1255 
1256  /// Strain-rate tensor: 1/2 (du_i/dx_j+du_j/dx_i)
1259 
1260  /// Compute traction (on the viscous scale) exerted onto
1261  /// the fluid at local coordinate s. N has to be outer unit normal
1262  /// to the fluid.
1264  const Vector<double>& N,
1265  Vector<double>& traction);
1266 
1267  /// Compute traction (on the viscous scale) exerted onto
1268  /// the fluid at local coordinate s, decomposed into pressure and
1269  /// normal and tangential viscous components.
1270  /// N has to be outer unit normal to the fluid.
1272  const Vector<double>& N,
1273  Vector<double>& traction_p,
1274  Vector<double>& traction_visc_n,
1275  Vector<double>& traction_visc_t);
1276 
1277  /// This implements a pure virtual function defined
1278  /// in the FSIFluidElement class. The function computes
1279  /// the traction (on the viscous scale), at the element's local
1280  /// coordinate s, that the fluid element exerts onto an adjacent
1281  /// solid element. The number of arguments is imposed by
1282  /// the interface defined in the FSIFluidElement -- only the
1283  /// unit normal N (pointing into the fluid!) is actually used
1284  /// in the computation.
1286  const Vector<double>& N,
1287  Vector<double>& load)
1288  {
1289  // Note: get_traction() computes the traction onto the fluid
1290  // if N is the outer unit normal onto the fluid; here we're
1291  // expecting N to point into the fluid so we're getting the
1292  // traction onto the adjacent wall instead!
1293  get_traction(s, N, load);
1294  }
1295 
1296  /// Compute the diagonal of the velocity/pressure mass matrices.
1297  /// If which one=0, both are computed, otherwise only the pressure
1298  /// (which_one=1) or the velocity mass matrix (which_one=2 -- the
1299  /// LSC version of the preconditioner only needs that one)
1301  Vector<double>& press_mass_diag,
1302  Vector<double>& veloc_mass_diag,
1303  const unsigned& which_one = 0);
1304 
1305  /// Number of scalars/fields output by this element. Reimplements
1306  /// broken virtual function in base class.
1307  unsigned nscalar_paraview() const
1308  {
1309  // The number of velocity components plus the pressure field
1310  return DIM + 1;
1311  }
1312 
1313  /// Write values of the i-th scalar field at the plot points. Needs
1314  /// to be implemented for each new specific element type.
1315  void scalar_value_paraview(std::ofstream& file_out,
1316  const unsigned& i,
1317  const unsigned& nplot) const
1318  {
1319  // Vector of local coordinates
1320  Vector<double> s(DIM + 1, 0.0);
1321 
1322  // How many plot points do we have in total?
1323  unsigned num_plot_points = nplot_points_paraview(nplot);
1324 
1325  // Loop over plot points
1326  for (unsigned iplot = 0; iplot < num_plot_points; iplot++)
1327  {
1328  // Get the local coordinates of the iplot-th plot point
1329  get_s_plot(iplot, nplot, s);
1330 
1331  // Velocities
1332  if (i < DIM)
1333  {
1334  // Output the i-th velocity component
1335  file_out << interpolated_u_nst(s, i) << std::endl;
1336  }
1337  // Pressure
1338  else if (i == DIM)
1339  {
1340  // Output the pressure at this point
1341  file_out << interpolated_p_nst(s) << std::endl;
1342  }
1343  // Never get here
1344  else
1345  {
1346 #ifdef PARANOID
1347  // Create an output stream
1348  std::stringstream error_stream;
1349 
1350  // Create the error message
1351  error_stream << "These Navier Stokes elements only store " << DIM + 1
1352  << " fields, "
1353  << "but i is currently " << i << std::endl;
1354 
1355  // Throw the error message
1356  throw OomphLibError(error_stream.str(),
1357  OOMPH_CURRENT_FUNCTION,
1358  OOMPH_EXCEPTION_LOCATION);
1359 #endif
1360  }
1361  } // for (unsigned iplot=0;iplot<num_plot_points;iplot++)
1362  } // End of scalar_value_paraview
1363 
1364 
1365  /// Write values of the i-th scalar field at the plot points. Needs
1366  /// to be implemented for each new specific element type.
1368  std::ofstream& file_out,
1369  const unsigned& i,
1370  const unsigned& nplot,
1371  const double& time,
1372  FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt) const
1373  {
1374 #ifdef PARANOID
1375  if (i > DIM)
1376  {
1377  // Create an output stream
1378  std::stringstream error_stream;
1379 
1380  // Create the error message
1381  error_stream << "These Navier Stokes elements only store " << DIM + 1
1382  << " fields, but i is currently " << i << std::endl;
1383 
1384  // Throw the error message
1385  throw OomphLibError(
1386  error_stream.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
1387  }
1388 #endif
1389 
1390  // Vector of local coordinates
1391  Vector<double> s(DIM + 1, 0.0);
1392 
1393  // Storage for the time value
1394  double interpolated_t = 0.0;
1395 
1396  // Storage for the spatial coordinates
1397  Vector<double> spatial_coordinates(DIM, 0.0);
1398 
1399  // How many plot points do we have in total?
1400  unsigned num_plot_points = nplot_points_paraview(nplot);
1401 
1402  // Loop over plot points
1403  for (unsigned iplot = 0; iplot < num_plot_points; iplot++)
1404  {
1405  // Get the local coordinates of the iplot-th plot point
1406  get_s_plot(iplot, nplot, s);
1407 
1408  // Loop over the spatial coordinates
1409  for (unsigned i = 0; i < DIM; i++)
1410  {
1411  // Assign the i-th spatial coordinate
1412  spatial_coordinates[i] = interpolated_x(s, i);
1413  }
1414 
1415  // Get the time value
1416  interpolated_t = interpolated_x(s, DIM);
1417 
1418  // ------ DRAIG: REMOVE ----------------------------------------
1419  // Exact solution vector (here it's simply a scalar)
1420  Vector<double> exact_soln(DIM + 1, 0.0);
1421  // DRAIG: Needs to be changed to a Vector of size DIM
1422  // ------ DRAIG: REMOVE ----------------------------------------
1423 
1424  // Get the exact solution at this point
1425  (*exact_soln_pt)(interpolated_t, spatial_coordinates, exact_soln);
1426 
1427  // Output the interpolated solution value
1428  file_out << exact_soln[i] << std::endl;
1429  } // for (unsigned iplot=0;iplot<num_plot_points;iplot++)
1430  } // End of scalar_value_fct_paraview
1431 
1432 
1433  /// Name of the i-th scalar field. Default implementation
1434  /// returns V1 for the first one, V2 for the second etc. Can (should!) be
1435  /// overloaded with more meaningful names in specific elements.
1436  std::string scalar_name_paraview(const unsigned& i) const
1437  {
1438  // Velocities
1439  if (i < DIM)
1440  {
1441  // Return the appropriate string for the i-th velocity component
1442  return "Velocity " + StringConversion::to_string(i);
1443  }
1444  // Pressure
1445  else if (i == DIM)
1446  {
1447  // Return the name for the pressure
1448  return "Pressure";
1449  }
1450  // Never get here
1451  else
1452  {
1453  // Create an output stream
1454  std::stringstream error_stream;
1455 
1456  // Create the error message
1457  error_stream << "These Navier Stokes elements only store " << DIM + 1
1458  << " fields,\nbut i is currently " << i << std::endl;
1459 
1460  // Throw the error message
1461  throw OomphLibError(
1462  error_stream.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
1463 
1464  // Dummy return so the compiler doesn't complain
1465  return " ";
1466  }
1467  } // End of scalar_name_paraview
1468 
1469 
1470  /// Output function: x,y,t,u,v,p in tecplot format. The
1471  /// default number of plot points is five
1472  void output(std::ostream& outfile)
1473  {
1474  // Set the number of plot points in each direction
1475  unsigned n_plot = 5;
1476 
1477  // Forward the call to the appropriate output function
1478  output(outfile, n_plot);
1479  } // End of output
1480 
1481 
1482  /// Output function: x,y,[z],u,v,[w],p in tecplot format. Here,
1483  /// we use n_plot plot points in each coordinate direction
1484  void output(std::ostream& outfile, const unsigned& n_plot);
1485 
1486 
1487  /// C-style output function: x,y,[z],u,v,[w],p in tecplot format. The
1488  /// default number of plot points is five
1489  void output(FILE* file_pt)
1490  {
1491  // Set the number of plot points in each direction
1492  unsigned n_plot = 5;
1493 
1494  // Forward the call to the appropriate output function
1495  output(file_pt, n_plot);
1496  } // End of output
1497 
1498 
1499  /// C-style output function: x,y,[z],u,v,[w],p in tecplot format. Use
1500  /// n_plot points in each coordinate direction
1501  void output(FILE* file_pt, const unsigned& n_plot);
1502 
1503 
1504  /// Full output function:
1505  /// x,y,[z],u,v,[w],p,du/dt,dv/dt,[dw/dt],dissipation in tecplot format. The
1506  /// default number of plot points is five
1507  void full_output(std::ostream& outfile)
1508  {
1509  // Set the number of plot points in each direction
1510  unsigned n_plot = 5;
1511 
1512  // Forward the call to the appropriate output function
1513  full_output(outfile, n_plot);
1514  } // End of full_output
1515 
1516 
1517  /// Full output function:
1518  /// x,y,t,u,v,p,du/dt,dv/dt,dissipation in tecplot format. Use
1519  /// n_plot plot points in each coordinate direction
1520  void full_output(std::ostream& outfile, const unsigned& n_plot);
1521 
1522 
1523  /// Output function: x,y,t,u,v in tecplot format. Use
1524  /// n_plot points in each coordinate direction at timestep t (t=0:
1525  /// present; t>0: previous timestep)
1526  void output_veloc(std::ostream& outfile,
1527  const unsigned& nplot,
1528  const unsigned& t);
1529 
1530 
1531  /// Output function: x,y,t,omega
1532  /// in tecplot format. nplot points in each coordinate direction
1533  void output_vorticity(std::ostream& outfile, const unsigned& nplot);
1534 
1535 
1536  /// Output exact solution specified via function pointer
1537  /// at a given number of plot points. Function prints as
1538  /// many components as are returned in solution Vector
1539  void output_fct(std::ostream& outfile,
1540  const unsigned& nplot,
1542 
1543 
1544  /// Output exact solution specified via function pointer
1545  /// at a given time and at a given number of plot points.
1546  /// Function prints as many components as are returned in solution Vector.
1547  void output_fct(std::ostream& outfile,
1548  const unsigned& nplot,
1549  const double& time,
1551 
1552 
1553  /// Compute the vector norm of the FEM solution
1555 
1556 
1557  /// Validate against exact solution at given time
1558  /// Solution is provided via function pointer.
1559  /// Plot at a given number of plot points and compute L2 error
1560  /// and L2 norm of velocity solution over element
1561  void compute_error(std::ostream& outfile,
1563  const double& time,
1564  double& error,
1565  double& norm);
1566 
1567 
1568  /// Validate against exact solution at given time
1569  /// Solution is provided via function pointer.
1570  /// Plot at a given number of plot points and compute L2 error
1571  /// and L2 norm of velocity solution over element
1572  void compute_error(std::ostream& outfile,
1574  const double& time,
1575  Vector<double>& error,
1576  Vector<double>& norm);
1577 
1578 
1579  /// Validate against exact solution.
1580  /// Solution is provided via function pointer.
1581  /// Plot at a given number of plot points and compute L2 error
1582  /// and L2 norm of velocity solution over element
1583  void compute_error(std::ostream& outfile,
1585  double& error,
1586  double& norm);
1587 
1588 
1589  /// Validate against exact solution. Solution is provided via
1590  /// function pointer. Compute L2 error and L2 norm of velocity solution
1591  /// over element.
1593  const double& time,
1594  double& error,
1595  double& norm);
1596 
1597 
1598  /// Validate against exact solution. Solution is provided via
1599  /// function pointer. Compute L2 error and L2 norm of velocity solution
1600  /// over element.
1602  double& error,
1603  double& norm);
1604 
1605 
1606  /// Compute the element's residual Vector
1608  {
1609  // Do we want to compute the Jacobian? ANSWER: No!
1610  unsigned compute_jacobian_flag = 0;
1611 
1612  // Call the generic residuals function using a dummy matrix argument
1614  residuals,
1617  compute_jacobian_flag);
1618  } // End of fill_in_contribution_to_residuals
1619 
1620 
1621  /// Compute the element's residual Vector and the jacobian matrix
1622  /// Virtual function can be overloaded by hanging-node version
1624  DenseMatrix<double>& jacobian)
1625  {
1626  // Do we want to compute the Jacobian? ANSWER: Yes!
1627  unsigned compute_jacobian_flag = 1;
1628 
1629  // Call the generic routine with the flag set to 1
1631  residuals,
1632  jacobian,
1634  compute_jacobian_flag);
1635  } // End of fill_in_contribution_to_residuals
1636 
1637 
1638  /// Add the element's contribution to its residuals vector,
1639  /// jacobian matrix and mass matrix
1641  Vector<double>& residuals,
1642  DenseMatrix<double>& jacobian,
1643  DenseMatrix<double>& mass_matrix)
1644  {
1645  // Do we want to compute the Jacobian AND mass matrix? ANSWER: Yes!
1646  unsigned compute_matrices_flag = 2;
1647 
1648  // Call the generic routine with the flag set to 2
1650  residuals, jacobian, mass_matrix, compute_matrices_flag);
1651  } // End of fill_in_contribution_to_jacobian_and_mass_matrix
1652 
1653 
1654  /// Compute the element's residual Vector (differentiated w.r.t. a
1655  /// parameter)
1657  double* const& parameter_pt, Vector<double>& dres_dparam)
1658  {
1659  // Do we want to compute the Jacobian? ANSWER: No!
1660  unsigned compute_jacobian_flag = 0;
1661 
1662  // Call the generic residuals function using a dummy matrix argument
1664  parameter_pt,
1665  dres_dparam,
1668  compute_jacobian_flag);
1669  } // End of fill_in_contribution_to_dresiduals_dparameter
1670 
1671 
1672  /// Compute the element's residual Vector and the jacobian matrix
1673  /// Virtual function can be overloaded by hanging-node version
1675  double* const& parameter_pt,
1676  Vector<double>& dres_dparam,
1677  DenseMatrix<double>& djac_dparam)
1678  {
1679  // Do we want to compute the Jacobian? ANSWER: Yes!
1680  unsigned compute_jacobian_flag = 1;
1681 
1682  // Call the generic routine with the flag set to 1
1684  parameter_pt,
1685  dres_dparam,
1686  djac_dparam,
1688  compute_jacobian_flag);
1689  } // End of fill_in_contribution_to_djacobian_dparameter
1690 
1691 
1692  /// Add the element's contribution to its residuals vector,
1693  /// jacobian matrix and mass matrix
1695  double* const& parameter_pt,
1696  Vector<double>& dres_dparam,
1697  DenseMatrix<double>& djac_dparam,
1698  DenseMatrix<double>& dmass_matrix_dparam)
1699  {
1700  // Do we want to compute the Jacobian AND mass matrix? ANSWER: Yes!
1701  unsigned compute_matrices_flag = 2;
1702 
1703  // Call the generic routine with the appropriate flag
1705  dres_dparam,
1706  djac_dparam,
1707  dmass_matrix_dparam,
1708  compute_matrices_flag);
1709  } // End of fill_in_contribution_to_djacobian_and_dmass_matrix_dparameter
1710 
1711 
1712  /// Compute the residuals for the associated pressure advection
1713  /// diffusion problem. Used by the Fp preconditioner.
1715  Vector<double>& residuals)
1716  {
1717  // Do we want to compute the Jacobian? ANSWER: No!
1718  unsigned compute_jacobian_flag = 0;
1719 
1720  // Call the generic routine with the appropriate flag
1722  residuals, GeneralisedElement::Dummy_matrix, compute_jacobian_flag);
1723  } // End of fill_in_pressure_advection_diffusion_residuals
1724 
1725 
1726  /// Compute the residuals and Jacobian for the associated
1727  /// pressure advection diffusion problem. Used by the Fp preconditioner.
1729  Vector<double>& residuals, DenseMatrix<double>& jacobian)
1730  {
1731  // Do we want to compute the Jacobian? ANSWER: Yes!
1732  unsigned compute_jacobian_flag = 1;
1733 
1734  // Call the generic routine with the appropriate flag
1736  residuals, jacobian, compute_jacobian_flag);
1737  } // End of fill_in_pressure_advection_diffusion_jacobian
1738 
1739 
1740  /// Pin all non-pressure dofs and backup eqn numbers
1742  std::map<Data*, std::vector<int>>& eqn_number_backup)
1743  {
1744  // Loop over internal data and pin the values (having established that
1745  // pressure dofs aren't amongst those)
1746  unsigned nint = this->ninternal_data();
1747  for (unsigned j = 0; j < nint; j++)
1748  {
1749  Data* data_pt = this->internal_data_pt(j);
1750  if (eqn_number_backup[data_pt].size() == 0)
1751  {
1752  unsigned nvalue = data_pt->nvalue();
1753  eqn_number_backup[data_pt].resize(nvalue);
1754  for (unsigned i = 0; i < nvalue; i++)
1755  {
1756  // Backup
1757  eqn_number_backup[data_pt][i] = data_pt->eqn_number(i);
1758 
1759  // Pin everything
1760  data_pt->pin(i);
1761  }
1762  }
1763  }
1764 
1765  // Now deal with nodal values
1766  unsigned nnod = this->nnode();
1767  for (unsigned j = 0; j < nnod; j++)
1768  {
1769  Node* nod_pt = this->node_pt(j);
1770  if (eqn_number_backup[nod_pt].size() == 0)
1771  {
1772  unsigned nvalue = nod_pt->nvalue();
1773  eqn_number_backup[nod_pt].resize(nvalue);
1774  for (unsigned i = 0; i < nvalue; i++)
1775  {
1776  // Pin everything apart from the nodal pressure
1777  // value
1778  if (int(i) != this->p_nodal_index_nst())
1779  {
1780  // Backup
1781  eqn_number_backup[nod_pt][i] = nod_pt->eqn_number(i);
1782 
1783  // Pin
1784  nod_pt->pin(i);
1785  }
1786  // Else it's a pressure value
1787  else
1788  {
1789  // Exclude non-nodal pressure based elements
1790  if (this->p_nodal_index_nst() >= 0)
1791  {
1792  // Backup
1793  eqn_number_backup[nod_pt][i] = nod_pt->eqn_number(i);
1794  }
1795  }
1796  }
1797 
1798 
1799  // If it's a solid node deal with its positional data too
1800  SolidNode* solid_nod_pt = dynamic_cast<SolidNode*>(nod_pt);
1801  if (solid_nod_pt != 0)
1802  {
1803  Data* solid_posn_data_pt = solid_nod_pt->variable_position_pt();
1804  if (eqn_number_backup[solid_posn_data_pt].size() == 0)
1805  {
1806  unsigned nvalue = solid_posn_data_pt->nvalue();
1807  eqn_number_backup[solid_posn_data_pt].resize(nvalue);
1808  for (unsigned i = 0; i < nvalue; i++)
1809  {
1810  // Backup
1811  eqn_number_backup[solid_posn_data_pt][i] =
1812  solid_posn_data_pt->eqn_number(i);
1813 
1814  // Pin
1815  solid_posn_data_pt->pin(i);
1816  }
1817  }
1818  }
1819  }
1820  }
1821  } // End of pin_all_non_pressure_dofs
1822 
1823 
1824  /// Build FaceElements that apply the Robin boundary condition
1825  /// to the pressure advection diffusion problem required by
1826  /// Fp preconditioner
1828  const unsigned& face_index) = 0;
1829 
1830 
1831  /// Output the FaceElements that apply the Robin boundary condition
1832  /// to the pressure advection diffusion problem required by
1833  /// Fp preconditioner
1835  std::ostream& outfile)
1836  {
1837  unsigned nel = Pressure_advection_diffusion_robin_element_pt.size();
1838  for (unsigned e = 0; e < nel; e++)
1839  {
1840  FaceElement* face_el_pt =
1842  outfile << "ZONE" << std::endl;
1843  Vector<double> unit_normal(DIM);
1844  Vector<double> x(DIM + 1);
1845  Vector<double> s(DIM);
1846  unsigned n = face_el_pt->integral_pt()->nweight();
1847  for (unsigned ipt = 0; ipt < n; ipt++)
1848  {
1849  for (unsigned i = 0; i < DIM; i++)
1850  {
1851  s[i] = face_el_pt->integral_pt()->knot(ipt, i);
1852  }
1853  face_el_pt->interpolated_x(s, x);
1854  face_el_pt->outer_unit_normal(ipt, unit_normal);
1855  for (unsigned i = 0; i < DIM + 1; i++)
1856  {
1857  outfile << x[i] << " ";
1858  }
1859  for (unsigned i = 0; i < DIM; i++)
1860  {
1861  outfile << unit_normal[i] << " ";
1862  }
1863  outfile << std::endl;
1864  }
1865  }
1866  } // End of output_pressure_advection_diffusion_robin_elements
1867 
1868 
1869  /// Delete the FaceElements that apply the Robin boundary condition
1870  /// to the pressure advection diffusion problem required by
1871  /// Fp preconditioner
1873  {
1874  unsigned nel = Pressure_advection_diffusion_robin_element_pt.size();
1875  for (unsigned e = 0; e < nel; e++)
1876  {
1878  }
1880  } // End of delete_pressure_advection_diffusion_robin_elements
1881 
1882 
1883  /// Compute derivatives of elemental residual vector with respect
1884  /// to nodal coordinates. Overwrites default implementation in
1885  /// FiniteElement base class.
1886  /// dresidual_dnodal_coordinates(l,i,j)=d res(l) / dX_{ij}
1888  RankThreeTensor<double>& dresidual_dnodal_coordinates);
1889 
1890 
1891  /// Compute vector of FE interpolated velocity u at local coordinate s
1893  Vector<double>& velocity) const
1894  {
1895  // Find the number of nodes
1896  unsigned n_node = nnode();
1897 
1898  // Local shape function
1899  Shape psi(n_node);
1900 
1901  // Find values of shape function
1902  shape(s, psi);
1903 
1904  // Loop over the velocity components
1905  for (unsigned i = 0; i < DIM; i++)
1906  {
1907  // Index at which the nodal value is stored
1908  unsigned u_nodal_index = u_index_nst(i);
1909 
1910  // Initialise the i-th value of the velocity vector
1911  velocity[i] = 0.0;
1912 
1913  // Loop over the local nodes and sum
1914  for (unsigned l = 0; l < n_node; l++)
1915  {
1916  // Update the i-th velocity component approximation
1917  velocity[i] += nodal_value(l, u_nodal_index) * psi[l];
1918  }
1919  } // for (unsigned i=0;i<DIM;i++)
1920  } // End of interpolated_u_nst
1921 
1922 
1923  /// Return FE interpolated velocity u[i] at local coordinate s
1924  double interpolated_u_nst(const Vector<double>& s, const unsigned& i) const
1925  {
1926  // Find the number of nodes
1927  unsigned n_node = nnode();
1928 
1929  // Local shape function
1930  Shape psi(n_node);
1931 
1932  // Find values of shape function
1933  shape(s, psi);
1934 
1935  // Get nodal index at which i-th velocity is stored
1936  unsigned u_nodal_index = u_index_nst(i);
1937 
1938  // Initialise value of u
1939  double interpolated_u = 0.0;
1940 
1941  // Loop over the local nodes and sum
1942  for (unsigned l = 0; l < n_node; l++)
1943  {
1944  // Update the i-th velocity component approximation
1945  interpolated_u += nodal_value(l, u_nodal_index) * psi[l];
1946  }
1947 
1948  // Return the calculated approximation to the i-th velocity component
1949  return interpolated_u;
1950  } // End of interpolated_u_nst
1951 
1952 
1953  /// Return FE interpolated velocity u[i] at local coordinate s
1954  /// time level, t. Purposely broken for space-time elements.
1955  double interpolated_u_nst(const unsigned& t,
1956  const Vector<double>& s,
1957  const unsigned& i) const
1958  {
1959  // Create an output stream
1960  std::ostringstream error_message_stream;
1961 
1962  // Create an error message
1963  error_message_stream << "This interface doesn't make sense in "
1964  << "space-time elements!" << std::endl;
1965 
1966  // Throw an error
1967  throw OomphLibError(error_message_stream.str(),
1968  OOMPH_CURRENT_FUNCTION,
1969  OOMPH_EXCEPTION_LOCATION);
1970  } // End of interpolated_u_nst
1971 
1972 
1973  /// Compute the derivatives of the i-th component of
1974  /// velocity at point s with respect
1975  /// to all data that can affect its value. In addition, return the global
1976  /// equation numbers corresponding to the data. The function is virtual
1977  /// so that it can be overloaded in the refineable version
1979  const unsigned& i,
1980  Vector<double>& du_ddata,
1981  Vector<unsigned>& global_eqn_number)
1982  {
1983  // Find the number of nodes
1984  unsigned n_node = nnode();
1985 
1986  // Local shape function
1987  Shape psi(n_node);
1988 
1989  // Find values of shape function
1990  shape(s, psi);
1991 
1992  // Get nodal index at which i-th velocity is stored
1993  unsigned u_nodal_index = u_index_nst(i);
1994 
1995  // Find the number of dofs associated with interpolated u
1996  unsigned n_u_dof = 0;
1997 
1998  // Loop over the nodes
1999  for (unsigned l = 0; l < n_node; l++)
2000  {
2001  // Get the global equation number of the dof
2002  int global_eqn = this->node_pt(l)->eqn_number(u_nodal_index);
2003 
2004  // If it's positive add to the count
2005  if (global_eqn >= 0)
2006  {
2007  // Increment the counter
2008  n_u_dof++;
2009  }
2010  } // End of dinterpolated_u_nst_ddata
2011 
2012  // Now resize the storage schemes
2013  du_ddata.resize(n_u_dof, 0.0);
2014  global_eqn_number.resize(n_u_dof, 0);
2015 
2016  // Loop over th nodes again and set the derivatives
2017  unsigned count = 0;
2018  // Loop over the local nodes and sum
2019  for (unsigned l = 0; l < n_node; l++)
2020  {
2021  // Get the global equation number
2022  int global_eqn = this->node_pt(l)->eqn_number(u_nodal_index);
2023  if (global_eqn >= 0)
2024  {
2025  // Set the global equation number
2026  global_eqn_number[count] = global_eqn;
2027  // Set the derivative with respect to the unknown
2028  du_ddata[count] = psi[l];
2029  // Increase the counter
2030  ++count;
2031  }
2032  }
2033  } // End of dinterpolated_u_nst_ddata
2034 
2035 
2036  /// Return FE interpolated pressure at local coordinate s
2037  virtual double interpolated_p_nst(const Vector<double>& s) const
2038  {
2039  // Find number of nodes
2040  unsigned n_pres = npres_nst();
2041  // Local shape function
2042  Shape psi(n_pres);
2043  // Find values of shape function
2044  pshape_nst(s, psi);
2045 
2046  // Initialise value of p
2047  double interpolated_p = 0.0;
2048  // Loop over the local nodes and sum
2049  for (unsigned l = 0; l < n_pres; l++)
2050  {
2051  interpolated_p += p_nst(l) * psi[l];
2052  }
2053 
2054  return (interpolated_p);
2055  }
2056 
2057 
2058  /// Return FE interpolated pressure at local coordinate s at time level t
2059  double interpolated_p_nst(const unsigned& t, const Vector<double>& s) const
2060  {
2061  // Find number of nodes
2062  unsigned n_pres = npres_nst();
2063  // Local shape function
2064  Shape psi(n_pres);
2065  // Find values of shape function
2066  pshape_nst(s, psi);
2067 
2068  // Initialise value of p
2069  double interpolated_p = 0.0;
2070  // Loop over the local nodes and sum
2071  for (unsigned l = 0; l < n_pres; l++)
2072  {
2073  interpolated_p += p_nst(t, l) * psi[l];
2074  }
2075 
2076  return (interpolated_p);
2077  }
2078 
2079 
2080  /// Output solution in data vector at local cordinates s:
2081  /// x,y,z,u,v,p
2083  {
2084  // Resize data for values
2085  data.resize(2 * DIM + 2);
2086 
2087  // Write values in the vector
2088  for (unsigned i = 0; i < DIM + 1; i++)
2089  {
2090  // Output the i-th (Eulerian) coordinate at these local coordinates
2091  data[i] = interpolated_x(s, i);
2092  }
2093 
2094  // Write values in the vector
2095  for (unsigned i = 0; i < DIM; i++)
2096  {
2097  // Output the i-th velocity component at these local coordinates
2098  data[i + (DIM + 1)] = this->interpolated_u_nst(s, i);
2099  }
2100 
2101  // Output the pressure field value at these local coordinates
2102  data[2 * DIM + 1] = this->interpolated_p_nst(s);
2103  } // End of point_output_data
2104  };
2105 
2106  /// ///////////////////////////////////////////////////////////////////////////
2107  /// ///////////////////////////////////////////////////////////////////////////
2108  /// ///////////////////////////////////////////////////////////////////////////
2109 
2110  //=======================================================================
2111  /// Taylor-Hood elements are Navier-Stokes elements with quadratic
2112  /// interpolation for velocities and positions and continuous linear
2113  /// pressure interpolation. They can be used within oomph-lib's
2114  /// block-preconditioning framework.
2115  //=======================================================================
2116  template<unsigned DIM>
2117  class QTaylorHoodSpaceTimeElement
2118  : public virtual QElement<DIM + 1, 3>,
2119  public virtual SpaceTimeNavierStokesEquations<DIM>
2120  {
2121  private:
2122  /// Static array of ints to hold number of variables at node
2123  static const unsigned Initial_Nvalue[];
2124 
2125  protected:
2126  /// Static array of ints to hold conversion from pressure
2127  /// node numbers to actual node numbers
2128  static const unsigned Pconv[];
2129 
2130 
2131  /// Velocity shape and test functions and their derivs
2132  /// w.r.t. to global coords at local coordinate s (taken from geometry)
2133  /// Return Jacobian of mapping between local and global coordinates.
2135  Shape& psi,
2136  DShape& dpsidx,
2137  Shape& test,
2138  DShape& dtestdx) const;
2139 
2140 
2141  /// Velocity shape and test functions and their derivs
2142  /// w.r.t. to global coords at local coordinate s (taken from geometry)
2143  /// Return Jacobian of mapping between local and global coordinates.
2144  inline double dshape_and_dtest_eulerian_at_knot_nst(const unsigned& ipt,
2145  Shape& psi,
2146  DShape& dpsidx,
2147  Shape& test,
2148  DShape& dtestdx) const;
2149 
2150 
2151  /// Shape/test functions and derivs w.r.t. to global coords at
2152  /// integration point ipt; return Jacobian of mapping (J). Also compute
2153  /// derivatives of dpsidx, dtestdx and J w.r.t. nodal coordinates.
2155  const unsigned& ipt,
2156  Shape& psi,
2157  DShape& dpsidx,
2158  RankFourTensor<double>& d_dpsidx_dX,
2159  Shape& test,
2160  DShape& dtestdx,
2161  RankFourTensor<double>& d_dtestdx_dX,
2162  DenseMatrix<double>& djacobian_dX) const;
2163 
2164 
2165  /// Pressure shape functions and their derivs w.r.t. to global coords
2166  /// at local coordinate s (taken from geometry). Return Jacobian of mapping
2167  /// between local and global coordinates.
2168  inline double dpshape_eulerian(const Vector<double>& s,
2169  Shape& ppsi,
2170  DShape& dppsidx) const;
2171 
2172 
2173  /// Pressure test functions and their derivs w.r.t. to global coords
2174  /// at local coordinate s (taken from geometry). Return Jacobian of mapping
2175  /// between local and global coordinates.
2176  inline double dptest_eulerian(const Vector<double>& s,
2177  Shape& ptest,
2178  DShape& dptestdx) const;
2179 
2180 
2181  /// Pressure shape and test functions and their derivs
2182  /// w.r.t. to global coords at local coordinate s (taken from geometry).
2183  /// Return Jacobian of mapping between local and global coordinates.
2185  Shape& ppsi,
2186  DShape& dppsidx,
2187  Shape& ptest,
2188  DShape& dptestdx) const;
2189 
2190  public:
2191  /// Constructor, no internal data points
2193  : QElement<DIM + 1, 3>(), SpaceTimeNavierStokesEquations<DIM>()
2194  {
2195  }
2196 
2197  // Destructor: delete the integration scheme
2199  {
2200  // Delete the integral pointer
2201  delete this->integral_pt();
2202  } // End of ~QTaylorHoodSpaceTimeElement
2203 
2204  /// Number of values (pinned or dofs) required at node n. Can
2205  /// be overwritten for hanging node version
2206  inline virtual unsigned required_nvalue(const unsigned& n) const
2207  {
2208  // Return the appropriate entry from Initial_Nvalue
2209  return Initial_Nvalue[n];
2210  } // End of required_nvalue
2211 
2212 
2213  /// Pressure shape functions at local coordinate s
2214  inline void pshape_nst(const Vector<double>& s, Shape& psi) const;
2215 
2216 
2217  /// Pressure test functions at local coordinate s
2218  inline void ptest_nst(const Vector<double>& s, Shape& psi) const;
2219 
2220 
2221  /// Pressure shape and test functions at local coordinte s
2222  inline void pshape_nst(const Vector<double>& s,
2223  Shape& psi,
2224  Shape& test) const;
2225 
2226 
2227  /// Set the value at which the pressure is stored in the nodes
2228  virtual int p_nodal_index_nst() const
2229  {
2230  // The pressure is stored straight after the velocity components
2231  return static_cast<int>(DIM);
2232  } // End of p_nodal_index_nst
2233 
2234 
2235  /// Return the local equation numbers for the pressure values.
2236  inline int p_local_eqn(const unsigned& n) const
2237  {
2238  // Get the local equation number associated with the n-th pressure dof
2239  return this->nodal_local_eqn(Pconv[n], p_nodal_index_nst());
2240  } // End of p_local_eqn
2241 
2242 
2243  /// Access function for the pressure values at local pressure
2244  /// node n_p (const version)
2245  double p_nst(const unsigned& n_p) const
2246  {
2247  // Get the nodal value associated with the n_p-th pressure dof
2248  return this->nodal_value(Pconv[n_p], this->p_nodal_index_nst());
2249  } // End of p_nst
2250 
2251 
2252  /// Access function for the pressure values at local pressure
2253  /// node n_p (const version)
2254  double p_nst(const unsigned& t, const unsigned& n_p) const
2255  {
2256  // Return the pressure value of the n_p-th pressure dof at time-level t
2257  return this->nodal_value(t, Pconv[n_p], this->p_nodal_index_nst());
2258  } // End of p_nst
2259 
2260 
2261  /// Return number of pressure values
2262  unsigned npres_nst() const
2263  {
2264  // There are 2^{DIM+1} pressure dofs where DIM is the spatial dimension
2265  // (rememebering that these are space-time elements)
2266  return static_cast<unsigned>(pow(2.0, static_cast<int>(DIM + 1)));
2267  } // End of npres_nst
2268 
2269 
2270  /// Pin p_dof-th pressure dof and set it to value specified by p_value.
2271  void fix_pressure(const unsigned& p_dof, const double& p_value)
2272  {
2273  // Pin the pressure dof
2274  this->node_pt(Pconv[p_dof])->pin(this->p_nodal_index_nst());
2275 
2276  // Now set its value
2277  this->node_pt(Pconv[p_dof])
2278  ->set_value(this->p_nodal_index_nst(), p_value);
2279  } // End of fix_pressure
2280 
2281 
2282  /// Build FaceElements that apply the Robin boundary condition
2283  /// to the pressure advection diffusion problem required by
2284  /// Fp preconditioner
2285  void build_fp_press_adv_diff_robin_bc_element(const unsigned& face_index)
2286  {
2287  // Create a new Robic BC element and add it to the storage
2290  QTaylorHoodSpaceTimeElement<DIM>>(this, face_index));
2291  } // End of build_fp_press_adv_diff_robin_bc_element
2292 
2293 
2294  /// Add to the set \c paired_load_data pairs containing
2295  /// - the pointer to a Data object
2296  /// and
2297  /// - the index of the value in that Data object
2298  /// .
2299  /// for all values (pressures, velocities) that affect the
2300  /// load computed in the \c get_load(...) function.
2302  std::set<std::pair<Data*, unsigned>>& paired_load_data);
2303 
2304 
2305  /// Add to the set \c paired_pressure_data pairs
2306  /// containing
2307  /// - the pointer to a Data object
2308  /// and
2309  /// - the index of the value in that Data object
2310  /// .
2311  /// for all pressure values that affect the
2312  /// load computed in the \c get_load(...) function.
2314  std::set<std::pair<Data*, unsigned>>& paired_pressure_data);
2315 
2316 
2317  /// Redirect output to NavierStokesEquations output
2318  void output(std::ostream& outfile)
2319  {
2320  // Call the base class implementation
2322  } // End of output
2323 
2324 
2325  /// Redirect output to NavierStokesEquations output
2326  void output(std::ostream& outfile, const unsigned& nplot)
2327  {
2328  // Call the base class implementation
2330  } // End of output
2331 
2332 
2333  /// Redirect output to NavierStokesEquations output
2334  void output(FILE* file_pt)
2335  {
2336  // Call the base class implementation
2338  } // End of output
2339 
2340 
2341  /// Redirect output to NavierStokesEquations output
2342  void output(FILE* file_pt, const unsigned& nplot)
2343  {
2344  // Call the base class implementation
2346  } // End of output
2347 
2348  /*
2349  /// DRAIG: Delete...
2350  /// The number of "DOF types" that degrees of freedom in this element
2351  /// are sub-divided into (DIM velocities + 1 pressure)
2352  unsigned ndof_types() const
2353  {
2354  // Return the number of dof types being used in the mesh
2355  return DIM+1;
2356  } // End of ndof_types
2357 
2358  /// Create a list of pairs for all unknowns in this element,
2359  /// so the first entry in each pair contains the global equation
2360  /// number of the unknown, while the second one contains the number
2361  /// of the "DOF type" that this unknown is associated with.
2362  /// (Function can obviously only be called if the equation numbering
2363  /// scheme has been set up.)
2364  ///
2365  /// The dof type enumeration (in 3D) is as follows:
2366  /// S_x = 0
2367  /// S_y = 1
2368  /// S_z = 2
2369  void get_dof_numbers_for_unknowns(
2370  std::list<std::pair<unsigned long,unsigned> >& dof_lookup_list) const;
2371  */
2372  };
2373 
2374  // Inline functions:
2375 
2376  //==========================================================================
2377  /// Derivatives of the shape functions and test functions w.r.t to
2378  /// global (Eulerian) coordinates. Return Jacobian of mapping between
2379  /// local and global coordinates.
2380  //==========================================================================
2381  template<unsigned DIM>
2383  const Vector<double>& s,
2384  Shape& psi,
2385  DShape& dpsidx,
2386  Shape& test,
2387  DShape& dtestdx) const
2388  {
2389  //--------------------------
2390  // Call the shape functions:
2391  //--------------------------
2392  // Find the element dimension
2393  const unsigned el_dim = this->dim();
2394 
2395  // Get the values of the shape functions and their local derivatives,
2396  // temporarily stored in dpsi
2397  this->dshape_local(s, psi, dpsidx);
2398 
2399  // Allocate memory for the inverse jacobian
2400  DenseMatrix<double> inverse_jacobian(el_dim);
2401 
2402  // Now calculate the inverse jacobian
2403  const double det =
2404  this->local_to_eulerian_mapping(dpsidx, inverse_jacobian);
2405 
2406  // Now set the values of the derivatives to be dpsidx
2407  this->transform_derivatives(inverse_jacobian, dpsidx);
2408 
2409  //-------------------------
2410  // Call the test functions:
2411  //-------------------------
2412  // Make sure we're using 3D elements
2413  if (el_dim != 3)
2414  {
2415  // Create an output stream
2416  std::ostringstream error_message_stream;
2417 
2418  // Create an error message
2419  error_message_stream << "Need 3D space-time elements for this to work!"
2420  << std::endl;
2421 
2422  // Throw the error message
2423  throw OomphLibError(error_message_stream.str(),
2424  OOMPH_CURRENT_FUNCTION,
2425  OOMPH_EXCEPTION_LOCATION);
2426  }
2427 
2428  //--------start_of_dshape_local--------------------------------------
2429  // Local storage
2430  double test_values[3][3];
2431  double dtest_values[3][3];
2432 
2433  // Index of the total shape function
2434  unsigned index = 0;
2435 
2436  // Call the 1D shape functions and derivatives
2437  OneDimLagrange::shape<3>(s[0], test_values[0]);
2438  OneDimLagrange::shape<3>(s[1], test_values[1]);
2439  OneDimLagrange::dshape<3>(s[0], dtest_values[0]);
2440  OneDimLagrange::dshape<3>(s[1], dtest_values[1]);
2441 
2442  // Set the time discretisation
2443  // OneDimLagrange::shape<3>(s[2],test_values[2]);
2444  // OneDimLagrange::dshape<3>(s[2],dtest_values[2]);
2445  OneDimDiscontinuousGalerkin::shape<3>(s[2], test_values[2]);
2446  OneDimDiscontinuousGalerkin::dshape<3>(s[2], dtest_values[2]);
2447 
2448  // Loop over the nodes in the third local coordinate direction
2449  for (unsigned k = 0; k < 3; k++)
2450  {
2451  // Loop over the nodes in the second local coordinate direction
2452  for (unsigned j = 0; j < 3; j++)
2453  {
2454  // Loop over the nodes in the first local coordinate direction
2455  for (unsigned i = 0; i < 3; i++)
2456  {
2457  // Calculate dtest/ds_0
2458  dtestdx(index, 0) =
2459  dtest_values[0][i] * test_values[1][j] * test_values[2][k];
2460 
2461  // Calculate dtest/ds_1
2462  dtestdx(index, 1) =
2463  test_values[0][i] * dtest_values[1][j] * test_values[2][k];
2464 
2465  // Calculate dtest/ds_2
2466  dtestdx(index, 2) =
2467  test_values[0][i] * test_values[1][j] * dtest_values[2][k];
2468 
2469  // Calculate the index-th entry of test
2470  test[index] =
2471  test_values[0][i] * test_values[1][j] * test_values[2][k];
2472 
2473  // Increment the index
2474  index++;
2475  }
2476  } // for (unsigned j=0;j<3;j++)
2477  } // for (unsigned k=0;k<3;k++)
2478  //--------end_of_dshape_local----------------------------------------
2479 
2480  // Transform derivatives from dtest/ds to dtest/dx
2481  this->transform_derivatives(inverse_jacobian, dtestdx);
2482 
2483  // Return the determinant value
2484  return det;
2485  } // End of dshape_and_dtest_eulerian_nst
2486 
2487  //==========================================================================
2488  /// Derivatives of the shape functions and test functions w.r.t to
2489  /// global (Eulerian) coordinates. Return Jacobian of mapping between
2490  /// local and global coordinates.
2491  //==========================================================================
2492  template<unsigned DIM>
2493  inline double QTaylorHoodSpaceTimeElement<
2494  DIM>::dshape_and_dtest_eulerian_at_knot_nst(const unsigned& ipt,
2495  Shape& psi,
2496  DShape& dpsidx,
2497  Shape& test,
2498  DShape& dtestdx) const
2499  {
2500  // Calculate the element dimension
2501  const unsigned el_dim = DIM + 1;
2502 
2503  // Storage for the local coordinates of the integration point
2504  Vector<double> s(el_dim, 0.0);
2505 
2506  // Set the local coordinate
2507  for (unsigned i = 0; i < el_dim; i++)
2508  {
2509  // Calculate the i-th local coordinate at the ipt-th knot point
2510  s[i] = this->integral_pt()->knot(ipt, i);
2511  }
2512 
2513  // Return the Jacobian of the geometrical shape functions and derivatives
2514  return dshape_and_dtest_eulerian_nst(s, psi, dpsidx, test, dtestdx);
2515  } // End of dshape_and_dtest_eulerian_at_knot_nst
2516 
2517 
2518  //==========================================================================
2519  /// 2D (in space): Pressure shape and test functions and derivs w.r.t. to
2520  /// Eulerian coordinates. Return Jacobian of mapping between local and
2521  /// global coordinates.
2522  //==========================================================================
2523  template<>
2525  const Vector<double>& s, Shape& ppsi, DShape& dppsidx) const
2526  {
2527  // Local storage for the shape function (x-direction)
2528  double psi1[2];
2529 
2530  // Local storage for the shape function (y-direction)
2531  double psi2[2];
2532 
2533  // Local storage for the shape function (z-direction)
2534  double psi3[2];
2535 
2536  // Local storage for the shape function derivatives (x-direction)
2537  double dpsi1[2];
2538 
2539  // Local storage for the test function derivatives (y-direction)
2540  double dpsi2[2];
2541 
2542  // Local storage for the test function derivatives (z-direction)
2543  double dpsi3[2];
2544 
2545  // Call the OneDimensional Shape functions
2546  OneDimLagrange::shape<2>(s[0], psi1);
2547 
2548  // Call the OneDimensional Shape functions
2549  OneDimLagrange::shape<2>(s[1], psi2);
2550 
2551  // Call the OneDimensional Shape functions
2552  OneDimLagrange::shape<2>(s[2], psi3);
2553 
2554  // Call the OneDimensional Shape functions
2555  OneDimLagrange::dshape<2>(s[0], dpsi1);
2556 
2557  // Call the OneDimensional Shape functions
2558  OneDimLagrange::dshape<2>(s[1], dpsi2);
2559 
2560  // Call the OneDimensional Shape functions
2561  OneDimLagrange::dshape<2>(s[2], dpsi3);
2562 
2563  //--------------------------------------------------------------------
2564  // Now let's loop over the nodal points in the element with s1 being
2565  // the "x" coordinate, s2 being the "y" coordinate and s3 being the
2566  // "z" coordinate:
2567  //--------------------------------------------------------------------
2568  // Loop over the points in the z-direction
2569  for (unsigned i = 0; i < 2; i++)
2570  {
2571  // Loop over the points in the y-direction
2572  for (unsigned j = 0; j < 2; j++)
2573  {
2574  // Loop over the points in the x-direction
2575  for (unsigned k = 0; k < 2; k++)
2576  {
2577  // Multiply the three 1D functions together to get the 3D function
2578  ppsi[4 * i + 2 * j + k] = psi3[i] * psi2[j] * psi1[k];
2579 
2580  // Multiply the appropriate shape and shape function derivatives
2581  // together
2582  dppsidx(4 * i + 2 * j + k, 0) = psi3[i] * psi2[j] * dpsi1[k];
2583 
2584  // Multiply the appropriate shape and shape function derivatives
2585  // together
2586  dppsidx(4 * i + 2 * j + k, 1) = psi3[i] * dpsi2[j] * psi1[k];
2587 
2588  // Multiply the appropriate shape and shape function derivatives
2589  // together
2590  dppsidx(4 * i + 2 * j + k, 2) = dpsi3[i] * psi2[j] * psi1[k];
2591  }
2592  } // for (unsigned j=0;j<2;j++)
2593  } // for (unsigned i=0;i<2;i++)
2594 
2595  // Allocate space for the geometrical shape functions
2596  Shape psi(27);
2597 
2598  // Allocate space for the geometrical shape function derivatives
2599  DShape dpsi(27, 3);
2600 
2601  // Get the values of the shape functions and their derivatives
2602  dshape_local(s, psi, dpsi);
2603 
2604  // Allocate memory for the 3x3 inverse jacobian
2605  DenseMatrix<double> inverse_jacobian(3);
2606 
2607  // Now calculate the inverse jacobian
2608  const double det = local_to_eulerian_mapping(dpsi, inverse_jacobian);
2609 
2610  // Now set the values of the derivatives to be derivatives w.r.t. to
2611  // the Eulerian coordinates
2612  transform_derivatives(inverse_jacobian, dppsidx);
2613 
2614  // Return the determinant of the jacobian
2615  return det;
2616  } // End of dpshape_eulerian
2617 
2618 
2619  //==========================================================================
2620  /// 2D (in space): Pressure shape and test functions and derivs w.r.t. to
2621  /// Eulerian coordinates. Return Jacobian of mapping between local and
2622  /// global coordinates.
2623  //==========================================================================
2624  template<>
2626  const Vector<double>& s, Shape& ptest, DShape& dptestdx) const
2627  {
2628  // Local storage for the shape function (x-direction)
2629  double test1[2];
2630 
2631  // Local storage for the shape function (y-direction)
2632  double test2[2];
2633 
2634  // Local storage for the shape function (z-direction)
2635  double test3[2];
2636 
2637  // Local storage for the shape function derivatives (x-direction)
2638  double dtest1[2];
2639 
2640  // Local storage for the test function derivatives (y-direction)
2641  double dtest2[2];
2642 
2643  // Local storage for the test function derivatives (z-direction)
2644  double dtest3[2];
2645 
2646  // Call the OneDimensional Shape functions
2647  OneDimLagrange::shape<2>(s[0], test1);
2648 
2649  // Call the OneDimensional Shape functions
2650  OneDimLagrange::shape<2>(s[1], test2);
2651 
2652  // Call the OneDimensional Shape functions
2653  // OneDimLagrange::shape<2>(s[2],test3);
2655 
2656  // Call the OneDimensional Shape functions
2657  OneDimLagrange::dshape<2>(s[0], dtest1);
2658 
2659  // Call the OneDimensional Shape functions
2660  OneDimLagrange::dshape<2>(s[1], dtest2);
2661 
2662  // Call the OneDimensional Shape functions
2663  // OneDimLagrange::dshape<2>(s[2],dtest3);
2665 
2666  //--------------------------------------------------------------------
2667  // Now let's loop over the nodal points in the element with s1 being
2668  // the "x" coordinate, s2 being the "y" coordinate and s3 being the
2669  // "z" coordinate:
2670  //--------------------------------------------------------------------
2671  // Loop over the points in the z-direction
2672  for (unsigned i = 0; i < 2; i++)
2673  {
2674  // Loop over the points in the y-direction
2675  for (unsigned j = 0; j < 2; j++)
2676  {
2677  // Loop over the points in the x-direction
2678  for (unsigned k = 0; k < 2; k++)
2679  {
2680  // Multiply the three 1D functions together to get the 3D function
2681  ptest[4 * i + 2 * j + k] = test3[i] * test2[j] * test1[k];
2682 
2683  // Multiply the appropriate shape and shape function derivatives
2684  // together
2685  dptestdx(4 * i + 2 * j + k, 0) = test3[i] * test2[j] * dtest1[k];
2686 
2687  // Multiply the appropriate shape and shape function derivatives
2688  // together
2689  dptestdx(4 * i + 2 * j + k, 1) = test3[i] * dtest2[j] * test1[k];
2690 
2691  // Multiply the appropriate shape and shape function derivatives
2692  // together
2693  dptestdx(4 * i + 2 * j + k, 2) = dtest3[i] * test2[j] * test1[k];
2694  }
2695  } // for (unsigned j=0;j<2;j++)
2696  } // for (unsigned i=0;i<2;i++)
2697 
2698  // Allocate space for the geometrical shape functions
2699  Shape psi(27);
2700 
2701  // Allocate space for the geometrical shape function derivatives
2702  DShape dpsi(27, 3);
2703 
2704  // Get the values of the shape functions and their derivatives
2705  dshape_local(s, psi, dpsi);
2706 
2707  // Allocate memory for the 3x3 inverse jacobian
2708  DenseMatrix<double> inverse_jacobian(3);
2709 
2710  // Now calculate the inverse jacobian
2711  const double det = local_to_eulerian_mapping(dpsi, inverse_jacobian);
2712 
2713  // Now set the values of the derivatives to be derivatives w.r.t. to
2714  // the Eulerian coordinates
2715  transform_derivatives(inverse_jacobian, dptestdx);
2716 
2717  // Return the determinant of the jacobian
2718  return det;
2719  } // End of dptest_eulerian
2720 
2721 
2722  //==========================================================================
2723  /// 2D (in space): Pressure shape and test functions and derivs w.r.t. to
2724  /// Eulerian coordinates. Return Jacobian of mapping between local and
2725  /// global coordinates.
2726  //==========================================================================
2727  template<>
2729  const Vector<double>& s,
2730  Shape& ppsi,
2731  DShape& dppsidx,
2732  Shape& ptest,
2733  DShape& dptestdx) const
2734  {
2735  // Call the test functions and derivatives
2736  dptest_eulerian(s, ptest, dptestdx);
2737 
2738  // Call the shape functions and derivatives and the Jacobian of the mapping
2739  return this->dpshape_eulerian(s, ppsi, dppsidx);
2740  } // End of dpshape_and_dptest_eulerian_nst
2741 
2742 
2743  //==========================================================================
2744  /// 2D (in space):
2745  /// Define the shape functions (psi) and test functions (test) and
2746  /// their derivatives w.r.t. global coordinates (dpsidx and dtestdx)
2747  /// and return Jacobian of mapping (J). Additionally compute the
2748  /// derivatives of dpsidx, dtestdx and J w.r.t. nodal coordinates.
2749  ///
2750  /// Galerkin: Test functions = shape functions
2751  //==========================================================================
2752  template<>
2755  const unsigned& ipt,
2756  Shape& psi,
2757  DShape& dpsidx,
2758  RankFourTensor<double>& d_dpsidx_dX,
2759  Shape& test,
2760  DShape& dtestdx,
2761  RankFourTensor<double>& d_dtestdx_dX,
2762  DenseMatrix<double>& djacobian_dX) const
2763  {
2764  // Call the geometrical shape functions and derivatives
2765  const double J = this->dshape_eulerian_at_knot(
2766  ipt, psi, dpsidx, djacobian_dX, d_dpsidx_dX);
2767 
2768  // DRAIG: Delete!
2769  throw OomphLibError("Hasn't been implemented properly yet!",
2770  OOMPH_CURRENT_FUNCTION,
2771  OOMPH_EXCEPTION_LOCATION);
2772 
2773  // Loop over the test functions and derivatives
2774  for (unsigned i = 0; i < 27; i++)
2775  {
2776  // The test functions are the same as the shape functions
2777  test[i] = psi[i];
2778 
2779  // Loop over the spatial derivatives
2780  for (unsigned k = 0; k < 3; k++)
2781  {
2782  // Set the test function derivatives to the shape function derivatives
2783  dtestdx(i, k) = dpsidx(i, k);
2784 
2785  // Loop over the dimensions
2786  for (unsigned p = 0; p < 3; p++)
2787  {
2788  // Loop over test functions
2789  for (unsigned q = 0; q < 27; q++)
2790  {
2791  // Set the test function derivatives to the shape function
2792  // derivatives
2793  d_dtestdx_dX(p, q, i, k) = d_dpsidx_dX(p, q, i, k);
2794  }
2795  } // for (unsigned p=0;p<3;p++)
2796  } // for (unsigned k=0;k<3;k++)
2797  } // for (unsigned i=0;i<27;i++)
2798 
2799  // Return the jacobian
2800  return J;
2801  } // End of dshape_and_dtest_eulerian_at_knot_nst
2802 
2803 
2804  //==========================================================================
2805  /// 2D (in space): Pressure shape functions
2806  //==========================================================================
2807  template<>
2809  const Vector<double>& s, Shape& psi) const
2810  {
2811  // Local storage for the shape function value (in the x-direction)
2812  double psi1[2];
2813 
2814  // Local storage for the shape function value (in the y-direction)
2815  double psi2[2];
2816 
2817  // Local storage for the shape function value (in the z-direction)
2818  double psi3[2];
2819 
2820  // Call the OneDimensional Shape functions
2821  OneDimLagrange::shape<2>(s[0], psi1);
2822 
2823  // Call the OneDimensional Shape functions
2824  OneDimLagrange::shape<2>(s[1], psi2);
2825 
2826  // Call the OneDimensional Shape functions
2827  OneDimLagrange::shape<2>(s[2], psi3);
2828 
2829  //--------------------------------------------------------------------
2830  // Now let's loop over the nodal points in the element with s1 being
2831  // the "x" coordinate, s2 being the "y" coordinate and s3 being the
2832  // "z" coordinate:
2833  //--------------------------------------------------------------------
2834  // Loop over the points in the z-direction
2835  for (unsigned i = 0; i < 2; i++)
2836  {
2837  // Loop over the points in the y-direction
2838  for (unsigned j = 0; j < 2; j++)
2839  {
2840  // Loop over the points in the x-direction
2841  for (unsigned k = 0; k < 2; k++)
2842  {
2843  // Multiply the three 1D functions together to get the 3D function
2844  psi[4 * i + 2 * j + k] = psi3[i] * psi2[j] * psi1[k];
2845  }
2846  } // for (unsigned j=0;j<2;j++)
2847  } // for (unsigned i=0;i<2;i++)
2848  } // End of pshape_nst
2849 
2850 
2851  //==========================================================================
2852  /// 2D (in space): Pressure shape functions
2853  //==========================================================================
2854  template<>
2856  Shape& test) const
2857  {
2858  // Local storage for the shape function value (in the x-direction)
2859  double test1[2];
2860 
2861  // Local storage for the shape function value (in the y-direction)
2862  double test2[2];
2863 
2864  // Local storage for the shape function value (in the z-direction)
2865  double test3[2];
2866 
2867  // Call the OneDimensional Shape functions
2868  OneDimLagrange::shape<2>(s[0], test1);
2869 
2870  // Call the OneDimensional Shape functions
2871  OneDimLagrange::shape<2>(s[1], test2);
2872 
2873  // Call the OneDimensional Shape functions
2875 
2876  //--------------------------------------------------------------------
2877  // Now let's loop over the nodal points in the element with s1 being
2878  // the "x" coordinate, s2 being the "y" coordinate and s3 being the
2879  // "z" coordinate:
2880  //--------------------------------------------------------------------
2881  // Loop over the points in the z-direction
2882  for (unsigned i = 0; i < 2; i++)
2883  {
2884  // Loop over the points in the y-direction
2885  for (unsigned j = 0; j < 2; j++)
2886  {
2887  // Loop over the points in the x-direction
2888  for (unsigned k = 0; k < 2; k++)
2889  {
2890  // Multiply the three 1D functions together to get the 3D function
2891  test[4 * i + 2 * j + k] = test3[i] * test2[j] * test1[k];
2892  }
2893  } // for (unsigned j=0;j<2;j++)
2894  } // for (unsigned i=0;i<2;i++)
2895  } // End of ptest_nst
2896 
2897 
2898  //==========================================================================
2899  /// Pressure shape and test functions
2900  //==========================================================================
2901  template<unsigned DIM>
2903  const Vector<double>& s, Shape& psi, Shape& test) const
2904  {
2905  // Call the pressure shape functions
2906  pshape_nst(s, psi);
2907 
2908  // Call the pressure test functions
2909  ptest_nst(s, test);
2910  } // End of pshape_nst
2911 
2912 
2913  //=======================================================================
2914  /// Face geometry of the 2D Taylor_Hood elements
2915  //=======================================================================
2916  template<>
2917  class FaceGeometry<QTaylorHoodSpaceTimeElement<2>>
2918  : public virtual QElement<2, 3>
2919  {
2920  public:
2921  /// Constructor; empty
2922  FaceGeometry() : QElement<2, 3>() {}
2923  };
2924 
2925  //=======================================================================
2926  /// Face geometry of the FaceGeometry of the 2D Taylor Hoodelements
2927  //=======================================================================
2928  template<>
2929  class FaceGeometry<FaceGeometry<QTaylorHoodSpaceTimeElement<2>>>
2930  : public virtual QElement<1, 3>
2931  {
2932  public:
2933  /// Constructor; empty
2934  FaceGeometry() : QElement<1, 3>() {}
2935  };
2936 
2937  /// /////////////////////////////////////////////////////////////////
2938  /// /////////////////////////////////////////////////////////////////
2939  /// /////////////////////////////////////////////////////////////////
2940 
2941  //==========================================================
2942  /// Taylor Hood upgraded to become projectable
2943  //==========================================================
2944  template<class TAYLOR_HOOD_ELEMENT>
2945  class ProjectableTaylorHoodSpaceTimeElement
2946  : public virtual ProjectableElement<TAYLOR_HOOD_ELEMENT>
2947  {
2948  public:
2949  /// Constructor [this was only required explicitly
2950  /// from gcc 4.5.2 onwards...]
2952 
2953 
2954  /// Specify the values associated with field fld.
2955  /// The information is returned in a vector of pairs which comprise
2956  /// the Data object and the value within it, that correspond to field fld.
2957  /// In the underlying Taylor Hood elements the fld-th velocities are stored
2958  /// at the fld-th value of the nodes; the pressures (the dim-th
2959  /// field) are the dim-th values at the vertex nodes etc.
2961  {
2962  // Create the vector
2963  Vector<std::pair<Data*, unsigned>> data_values;
2964 
2965  // If we're dealing with the velocity dofs
2966  if (fld < this->dim() - 1)
2967  {
2968  // How many nodes in the element?
2969  unsigned nnod = this->nnode();
2970 
2971  // Loop over all nodes
2972  for (unsigned j = 0; j < nnod; j++)
2973  {
2974  // Add the data value associated with the velocity components
2975  data_values.push_back(std::make_pair(this->node_pt(j), fld));
2976  }
2977  }
2978  // If we're dealing with the pressure dof
2979  else
2980  {
2981  // How many pressure dofs are there?
2982  // DRAIG: Shouldn't there be more?
2983  unsigned Pconv_size = this->dim();
2984 
2985  // Loop over all vertex nodes
2986  for (unsigned j = 0; j < Pconv_size; j++)
2987  {
2988  // Get the vertex index associated with the j-th pressure dof
2989  unsigned vertex_index = this->Pconv[j];
2990 
2991  // Add the data value associated with the pressure components
2992  data_values.push_back(
2993  std::make_pair(this->node_pt(vertex_index), fld));
2994  }
2995  } // if (fld<this->dim())
2996 
2997  // Return the vector
2998  return data_values;
2999  } // End of data_values_of_field
3000 
3001 
3002  /// Number of fields to be projected: dim+1, corresponding to
3003  /// velocity components and pressure
3005  {
3006  // There are dim velocity dofs and 1 pressure dof
3007  return this->dim();
3008  } // End of nfields_for_projection
3009 
3010 
3011  /// Number of history values to be stored for fld-th field. Whatever
3012  /// the timestepper has set up for the velocity components and none for
3013  /// the pressure field. NOTE: The count includes the current value!
3014  unsigned nhistory_values_for_projection(const unsigned& fld)
3015  {
3016  // If we're dealing with the pressure dof
3017  if (fld == this->dim())
3018  {
3019  // Pressure doesn't have history values
3020  return this->node_pt(0)->ntstorage();
3021  }
3022  // If we're dealing with the velocity dofs
3023  else
3024  {
3025  // The velocity dofs have ntstorage() history values
3026  return this->node_pt(0)->ntstorage();
3027  }
3028  } // End of nhistory_values_for_projection
3029 
3030 
3031  /// Number of positional history values
3032  /// (Note: count includes current value!)
3034  {
3035  // Return the number of positional history values
3036  return this->node_pt(0)->position_time_stepper_pt()->ntstorage();
3037  } // End of nhistory_values_for_coordinate_projection
3038 
3039 
3040  /// Return the Jacobian of the mapping and the shape functions
3041  /// of field fld at local coordinate s
3042  double jacobian_and_shape_of_field(const unsigned& fld,
3043  const Vector<double>& s,
3044  Shape& psi)
3045  {
3046  // How many dimensions in this element?
3047  unsigned n_dim = this->dim();
3048 
3049  // How many nodes in this element?
3050  unsigned n_node = this->nnode();
3051 
3052  // If we're on the pressure dof
3053  if (fld == n_dim)
3054  {
3055  // Call the pressure interpolation function
3056  this->pshape_nst(s, psi);
3057 
3058  // Allocate space for the pressure shape function
3059  Shape psif(n_node);
3060 
3061  // Allocate space for the pressure test function
3062  Shape testf(n_node);
3063 
3064  // Allocate space for the pressure shape function derivatives
3065  DShape dpsifdx(n_node, n_dim);
3066 
3067  // Allocate space for the pressure test function derivatives
3068  DShape dtestfdx(n_node, n_dim);
3069 
3070  // Calculate the Jacobian of the mapping
3071  double J = this->dshape_and_dtest_eulerian_nst(
3072  s, psif, dpsifdx, testf, dtestfdx);
3073 
3074  // Return the Jacobian
3075  return J;
3076  }
3077  // If we're on the velocity components
3078  else
3079  {
3080  // Allocate space for the test functions
3081  Shape testf(n_node);
3082 
3083  // Allocate space for the shape function derivatives
3084  DShape dpsifdx(n_node, n_dim);
3085 
3086  // Allocate space for the test function derivatives
3087  DShape dtestfdx(n_node, n_dim);
3088 
3089  // Calculate the Jacobian of the mapping
3090  double J =
3091  this->dshape_and_dtest_eulerian_nst(s, psi, dpsifdx, testf, dtestfdx);
3092 
3093  // Return the Jacobian
3094  return J;
3095  }
3096  } // End of jacobian_and_shape_of_field
3097 
3098 
3099  /// Return interpolated field fld at local coordinate s, at time
3100  /// level t (t=0: present; t>0: history values)
3101  double get_field(const unsigned& t,
3102  const unsigned& fld,
3103  const Vector<double>& s)
3104  {
3105  unsigned n_dim = this->dim();
3106  unsigned n_node = this->nnode();
3107 
3108  // If fld=n_dim, we deal with the pressure
3109  if (fld == n_dim)
3110  {
3111  return this->interpolated_p_nst(t, s);
3112  }
3113  // Velocity
3114  else
3115  {
3116  // Find the index at which the variable is stored
3117  unsigned u_nodal_index = this->u_index_nst(fld);
3118 
3119  // Local shape function
3120  Shape psi(n_node);
3121 
3122  // Find values of shape function
3123  this->shape(s, psi);
3124 
3125  // Initialise value of u
3126  double interpolated_u = 0.0;
3127 
3128  // Sum over the local nodes at that time
3129  for (unsigned l = 0; l < n_node; l++)
3130  {
3131  interpolated_u += this->nodal_value(t, l, u_nodal_index) * psi[l];
3132  }
3133  return interpolated_u;
3134  }
3135  }
3136 
3137 
3138  /// Return number of values in field fld
3139  unsigned nvalue_of_field(const unsigned& fld)
3140  {
3141  if (fld == this->dim())
3142  {
3143  return this->npres_nst();
3144  }
3145  else
3146  {
3147  return this->nnode();
3148  }
3149  }
3150 
3151 
3152  /// Return local equation number of value j in field fld.
3153  int local_equation(const unsigned& fld, const unsigned& j)
3154  {
3155  if (fld == this->dim())
3156  {
3157  return this->p_local_eqn(j);
3158  }
3159  else
3160  {
3161  const unsigned u_nodal_index = this->u_index_nst(fld);
3162  return this->nodal_local_eqn(j, u_nodal_index);
3163  }
3164  }
3165  };
3166 
3167 
3168  //=======================================================================
3169  /// Face geometry for element is the same as that for the underlying
3170  /// wrapped element
3171  //=======================================================================
3172  template<class ELEMENT>
3173  class FaceGeometry<ProjectableTaylorHoodSpaceTimeElement<ELEMENT>>
3174  : public virtual FaceGeometry<ELEMENT>
3175  {
3176  public:
3177  FaceGeometry() : FaceGeometry<ELEMENT>() {}
3178  };
3179 
3180  //=======================================================================
3181  /// Face geometry of the Face Geometry for element is the same as
3182  /// that for the underlying wrapped element
3183  //=======================================================================
3184  template<class ELEMENT>
3185  class FaceGeometry<
3186  FaceGeometry<ProjectableTaylorHoodSpaceTimeElement<ELEMENT>>>
3187  : public virtual FaceGeometry<FaceGeometry<ELEMENT>>
3188  {
3189  public:
3191  };
3192 
3193 } // End of namespace oomph
3194 
3195 #endif
e
Definition: cfortran.h:571
static char t char * s
Definition: cfortran.h:568
cstr elem_len * i
Definition: cfortran.h:603
char t
Definition: cfortran.h:568
A Class for the derivatives of shape functions The class design is essentially the same as Shape,...
Definition: shape.h:278
A class that represents a collection of data; each Data object may contain many different individual ...
Definition: nodes.h:86
long & eqn_number(const unsigned &i)
Return the equation number of the i-th stored variable.
Definition: nodes.h:367
void pin(const unsigned &i)
Pin the i-th stored variable.
Definition: nodes.h:385
double * value_pt(const unsigned &i) const
Return the pointer to the i-the stored value. Typically this is required when direct access to the st...
Definition: nodes.h:324
void set_value(const unsigned &i, const double &value_)
Set the i-th stored data value to specified value. The only reason that we require an explicit set fu...
Definition: nodes.h:271
unsigned nvalue() const
Return number of values stored in data object (incl pinned ones).
Definition: nodes.h:483
/////////////////////////////////////////////////////////////////////////
Definition: fsi.h:63
FaceElements are elements that coincide with the faces of higher-dimensional "bulk" elements....
Definition: elements.h:4342
int & face_index()
Index of the face (a number that uniquely identifies the face in the element)
Definition: elements.h:4630
void outer_unit_normal(const Vector< double > &s, Vector< double > &unit_normal) const
Compute outer unit normal at the specified local coordinate.
Definition: elements.cc:6036
double interpolated_x(const Vector< double > &s, const unsigned &i) const
Return FE interpolated coordinate x[i] at local coordinate s. Overloaded to get information from bulk...
Definition: elements.h:4532
//////////////////////////////////////////////////////////////////// ////////////////////////////////...
Definition: elements.h:5002
A general Finite Element class.
Definition: elements.h:1317
virtual unsigned nplot_points_paraview(const unsigned &nplot) const
Return the number of actual plot points for paraview plot with parameter nplot. Broken virtual; can b...
Definition: elements.h:2866
virtual void local_coordinate_of_node(const unsigned &j, Vector< double > &s) const
Get local coordinates of node j in the element; vector sets its own size (broken virtual)
Definition: elements.h:1846
Node *& node_pt(const unsigned &n)
Return a pointer to the local node n.
Definition: elements.h:2179
double nodal_value(const unsigned &n, const unsigned &i) const
Return the i-th value stored at local node n. Produces suitably interpolated values for hanging nodes...
Definition: elements.h:2597
virtual void output(std::ostream &outfile)
Output the element data — typically the values at the nodes in a format suitable for post-processing.
Definition: elements.h:3054
double size() const
Calculate the size of the element (length, area, volume,...) in Eulerian computational coordinates....
Definition: elements.cc:4320
virtual void shape(const Vector< double > &s, Shape &psi) const =0
Calculate the geometric shape functions at local coordinate s. This function must be overloaded for e...
virtual double interpolated_x(const Vector< double > &s, const unsigned &i) const
Return FE interpolated coordinate x[i] at local coordinate s.
Definition: elements.cc:3992
int nodal_local_eqn(const unsigned &n, const unsigned &i) const
Return the local equation number corresponding to the i-th value at the n-th local node.
Definition: elements.h:1436
unsigned dim() const
Return the spatial dimension of the element, i.e. the number of local coordinates required to paramet...
Definition: elements.h:2615
unsigned nnode() const
Return the number of nodes.
Definition: elements.h:2214
void(* SteadyExactSolutionFctPt)(const Vector< double > &, Vector< double > &)
Function pointer for function that computes vector-valued steady "exact solution" as .
Definition: elements.h:1763
Integral *const & integral_pt() const
Return the pointer to the integration scheme (const version)
Definition: elements.h:1967
virtual void get_s_plot(const unsigned &i, const unsigned &nplot, Vector< double > &s, const bool &shifted_to_interior=false) const
Get cector of local coordinates of plot point i (when plotting nplot points in each "coordinate direc...
Definition: elements.h:3152
double dshape_eulerian(const Vector< double > &s, Shape &psi, DShape &dpsidx) const
Compute the geometric shape functions and also first derivatives w.r.t. global coordinates at local c...
Definition: elements.cc:3328
virtual void build_face_element(const int &face_index, FaceElement *face_element_pt)
Function for building a lower dimensional FaceElement on the specified face of the FiniteElement....
Definition: elements.cc:5162
void(* UnsteadyExactSolutionFctPt)(const double &, const Vector< double > &, Vector< double > &)
Function pointer for function that computes Vector-valued time-dependent function as .
Definition: elements.h:1769
bool has_hanging_nodes() const
Return boolean to indicate if any of the element's nodes are geometrically hanging.
Definition: elements.h:2474
Helper class for elements that impose Robin boundary conditions on pressure advection diffusion probl...
virtual void fill_in_generic_residual_contribution_fp_press_adv_diff_robin_bc(Vector< double > &residuals, DenseMatrix< double > &jacobian, const unsigned &compute_jacobian_flag)=0
This function returns the residuals for the traction function. If compute_jacobian_flag=1 (or 0): do ...
//////////////////////////////////////////////////////////////////// ////////////////////////////////...
void output(std::ostream &outfile, const unsigned &nplot)
Output function: x,y,[z],u,v,[w],p in tecplot format.
void fill_in_contribution_to_residuals(Vector< double > &residuals)
This function returns just the residuals.
virtual void fill_in_generic_residual_contribution_fp_press_adv_diff_robin_bc(Vector< double > &residuals, DenseMatrix< double > &jacobian, const unsigned &flag)
This function returns the residuals for the traction function. flag=1 (or 0): do (or don't) compute t...
FpPressureAdvDiffRobinBCSpaceTimeElement(FiniteElement *const &element_pt, const int &face_index, const bool &called_from_refineable_constructor=false)
Constructor, which takes a "bulk" element and the value of the index and its limit....
void fill_in_contribution_to_jacobian(Vector< double > &residuals, DenseMatrix< double > &jacobian)
This function returns the residuals and the jacobian.
virtual void fill_in_generic_residual_contribution_fp_press_adv_diff_robin_bc(Vector< double > &residuals, DenseMatrix< double > &jacobian, const unsigned &flag)
This function returns the residuals for the traction function. flag=1 (or 0): do (or don't) compute t...
static double Default_fd_jacobian_step
Double used for the default finite difference step in elemental jacobian calculations.
Definition: elements.h:1202
Data *& external_data_pt(const unsigned &i)
Return a pointer to i-th external data object.
Definition: elements.h:659
Data *& internal_data_pt(const unsigned &i)
Return a pointer to i-th internal data object.
Definition: elements.h:622
static DenseMatrix< double > Dummy_matrix
Empty dense matrix used as a dummy argument to combined residual and jacobian functions in the case w...
Definition: elements.h:227
unsigned ninternal_data() const
Return the number of internal data objects.
Definition: elements.h:827
unsigned add_external_data(Data *const &data_pt, const bool &fd=true)
Add a (pointer to an) external data object to the element and return its index (i....
Definition: elements.cc:312
virtual double knot(const unsigned &i, const unsigned &j) const =0
Return local coordinate s[j] of i-th integration point.
virtual unsigned nweight() const =0
Return the number of integration points of the scheme.
Nodes are derived from Data, but, in addition, have a definite (Eulerian) position in a space of a gi...
Definition: nodes.h:906
An OomphLibError object which should be thrown when an run-time error is encountered....
double get_field(const unsigned &t, const unsigned &fld, const Vector< double > &s)
Return interpolated field fld at local coordinate s, at time level t (t=0: present; t>0: history valu...
unsigned nfields_for_projection()
Number of fields to be projected: dim+1, corresponding to velocity components and pressure.
unsigned nvalue_of_field(const unsigned &fld)
Return number of values in field fld.
unsigned nhistory_values_for_coordinate_projection()
Number of positional history values (Note: count includes current value!)
Vector< std::pair< Data *, unsigned > > data_values_of_field(const unsigned &fld)
Specify the values associated with field fld. The information is returned in a vector of pairs which ...
int local_equation(const unsigned &fld, const unsigned &j)
Return local equation number of value j in field fld.
double jacobian_and_shape_of_field(const unsigned &fld, const Vector< double > &s, Shape &psi)
Return the Jacobian of the mapping and the shape functions of field fld at local coordinate s.
ProjectableTaylorHoodSpaceTimeElement()
Constructor [this was only required explicitly from gcc 4.5.2 onwards...].
unsigned nhistory_values_for_projection(const unsigned &fld)
Number of history values to be stored for fld-th field. Whatever the timestepper has set up for the v...
/////////////////////////////////////////////////////////////////////// /////////////////////////////...
Definition: Qelements.h:459
/////////////////////////////////////////////////////////////////////////// /////////////////////////...
void output(std::ostream &outfile)
Redirect output to NavierStokesEquations output.
virtual int p_nodal_index_nst() const
Set the value at which the pressure is stored in the nodes.
void output(FILE *file_pt, const unsigned &nplot)
Redirect output to NavierStokesEquations output.
double dptest_eulerian(const Vector< double > &s, Shape &ptest, DShape &dptestdx) const
Pressure test functions and their derivs w.r.t. to global coords at local coordinate s (taken from ge...
double p_nst(const unsigned &t, const unsigned &n_p) const
Access function for the pressure values at local pressure node n_p (const version)
double dpshape_eulerian(const Vector< double > &s, Shape &ppsi, DShape &dppsidx) const
Pressure shape functions and their derivs w.r.t. to global coords at local coordinate s (taken from g...
static const unsigned Initial_Nvalue[]
Static array of ints to hold number of variables at node.
void pshape_nst(const Vector< double > &s, Shape &psi) const
Pressure shape functions at local coordinate s.
void fix_pressure(const unsigned &p_dof, const double &p_value)
Pin p_dof-th pressure dof and set it to value specified by p_value.
static const unsigned Pconv[]
Static array of ints to hold conversion from pressure node numbers to actual node numbers.
void output(std::ostream &outfile, const unsigned &nplot)
Redirect output to NavierStokesEquations output.
virtual unsigned required_nvalue(const unsigned &n) const
Number of values (pinned or dofs) required at node n. Can be overwritten for hanging node version.
int p_local_eqn(const unsigned &n) const
Return the local equation numbers for the pressure values.
double p_nst(const unsigned &n_p) const
Access function for the pressure values at local pressure node n_p (const version)
void pshape_nst(const Vector< double > &s, Shape &psi, Shape &test) const
Pressure shape and test functions at local coordinte s.
void build_fp_press_adv_diff_robin_bc_element(const unsigned &face_index)
Build FaceElements that apply the Robin boundary condition to the pressure advection diffusion proble...
void identify_load_data(std::set< std::pair< Data *, unsigned >> &paired_load_data)
Add to the set paired_load_data pairs containing.
void ptest_nst(const Vector< double > &s, Shape &psi) const
Pressure test functions at local coordinate s.
void identify_pressure_data(std::set< std::pair< Data *, unsigned >> &paired_pressure_data)
Add to the set paired_pressure_data pairs containing.
double dpshape_and_dptest_eulerian_nst(const Vector< double > &s, Shape &ppsi, DShape &dppsidx, Shape &ptest, DShape &dptestdx) const
Pressure shape and test functions and their derivs w.r.t. to global coords at local coordinate s (tak...
double dshape_and_dtest_eulerian_at_knot_nst(const unsigned &ipt, Shape &psi, DShape &dpsidx, RankFourTensor< double > &d_dpsidx_dX, Shape &test, DShape &dtestdx, RankFourTensor< double > &d_dtestdx_dX, DenseMatrix< double > &djacobian_dX) const
Shape/test functions and derivs w.r.t. to global coords at integration point ipt; return Jacobian of ...
double dshape_and_dtest_eulerian_at_knot_nst(const unsigned &ipt, Shape &psi, DShape &dpsidx, Shape &test, DShape &dtestdx) const
Velocity shape and test functions and their derivs w.r.t. to global coords at local coordinate s (tak...
void output(FILE *file_pt)
Redirect output to NavierStokesEquations output.
double dshape_and_dtest_eulerian_nst(const Vector< double > &s, Shape &psi, DShape &dpsidx, Shape &test, DShape &dtestdx) const
Velocity shape and test functions and their derivs w.r.t. to global coords at local coordinate s (tak...
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Definition: matrices.h:1701
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Definition: matrices.h:1370
RefineableElements are FiniteElements that may be subdivided into children to provide a better local ...
A Class for shape functions. In simple cases, the shape functions have only one index that can be tho...
Definition: shape.h:76
A Class for nodes that deform elastically (i.e. position is an unknown in the problem)....
Definition: nodes.h:1686
Data *const & variable_position_pt() const
Pointer to variable_position data (const version)
Definition: nodes.h:1765
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virtual double dpshape_and_dptest_eulerian_nst(const Vector< double > &s, Shape &ppsi, DShape &dppsidx, Shape &ptest, DShape &dptestdx) const =0
Compute the pressure shape and test functions and derivatives w.r.t. global coords at local coordinat...
NavierStokesBodyForceFctPt & body_force_fct_pt()
Access function for the body-force pointer.
void get_pressure_and_velocity_mass_matrix_diagonal(Vector< double > &press_mass_diag, Vector< double > &veloc_mass_diag, const unsigned &which_one=0)
Compute the diagonal of the velocity/pressure mass matrices. If which one=0, both are computed,...
virtual void dinterpolated_u_nst_ddata(const Vector< double > &s, const unsigned &i, Vector< double > &du_ddata, Vector< unsigned > &global_eqn_number)
Compute the derivatives of the i-th component of velocity at point s with respect to all data that ca...
void fill_in_pressure_advection_diffusion_jacobian(Vector< double > &residuals, DenseMatrix< double > &jacobian)
Compute the residuals and Jacobian for the associated pressure advection diffusion problem....
static Vector< double > Gamma
Vector to decide whether the stress-divergence form is used or not N.B. This needs to be public so th...
double *& st_pt()
Pointer to Strouhal number (can only assign to private member data)
double * ReInvFr_pt
Pointer to global Reynolds number x inverse Froude number (= Bond number / Capillary number)
int Pinned_fp_pressure_eqn
Global eqn number of pressure dof that's pinned in pressure advection diffusion problem (defaults to ...
void disable_ALE()
Disable ALE, i.e. assert the mesh is not moving – you do this at your own risk!
void compute_error(std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, Vector< double > &error, Vector< double > &norm)
Validate against exact solution at given time Solution is provided via function pointer....
virtual void fill_in_generic_residual_contribution_nst(Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix, const unsigned &flag)
Compute the residuals for the Navier-Stokes equations. Flag=1 (or 0): do (or don't) compute the Jacob...
void get_traction(const Vector< double > &s, const Vector< double > &N, Vector< double > &traction)
Compute traction (on the viscous scale) exerted onto the fluid at local coordinate s....
void compute_error(FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)
Validate against exact solution. Solution is provided via function pointer. Compute L2 error and L2 n...
void full_output(std::ostream &outfile)
Full output function: x,y,[z],u,v,[w],p,du/dt,dv/dt,[dw/dt],dissipation in tecplot format....
const double & st() const
Strouhal parameter (const. version)
double dissipation(const Vector< double > &s) const
Return dissipation at local coordinate s.
virtual double dshape_and_dtest_eulerian_nst(const Vector< double > &s, Shape &psi, DShape &dpsidx, Shape &test, DShape &dtestdx) const =0
Compute the shape functions and derivatives w.r.t. global coords at local coordinate s....
NavierStokesPressureAdvDiffSourceFctPt Press_adv_diff_source_fct_pt
Pointer to source function pressure advection diffusion equation (only to be used during validation)
virtual int p_nodal_index_nst() const
Return the index at which the pressure is stored if it is stored at the nodes. If not stored at the n...
void delete_pressure_advection_diffusion_robin_elements()
Delete the FaceElements that apply the Robin boundary condition to the pressure advection diffusion p...
void compute_norm(Vector< double > &norm)
Compute the vector norm of the FEM solution.
void output_fct(std::ostream &outfile, const unsigned &nplot, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt)
Output exact solution specified via function pointer at a given number of plot points....
virtual double dshape_and_dtest_eulerian_at_knot_nst(const unsigned &ipt, Shape &psi, DShape &dpsidx, RankFourTensor< double > &d_dpsidx_dX, Shape &test, DShape &dtestdx, RankFourTensor< double > &d_dtestdx_dX, DenseMatrix< double > &djacobian_dX) const =0
Shape/test functions and derivs w.r.t. to global coords at integration point ipt; return Jacobian of ...
unsigned n_u_nst() const
Return the number of velocity components (used in FluidInterfaceElements)
double * St_pt
Pointer to global Reynolds number x Strouhal number (=Womersley)
void compute_error(FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)
Validate against exact solution. Solution is provided via function pointer. Compute L2 error and L2 n...
void get_vorticity(const Vector< double > &s, double &vorticity) const
Compute the vorticity vector at local coordinate s.
double * Density_Ratio_pt
Pointer to the density ratio (relative to the density used in the definition of the Reynolds number)
double du_dt_nst(const unsigned &n, const unsigned &i) const
i-th component of du/dt at local node n. Uses suitably interpolated value for hanging nodes.
NavierStokesBodyForceFctPt body_force_fct_pt() const
Access function for the body-force pointer. Const version.
virtual double interpolated_p_nst(const Vector< double > &s) const
Return FE interpolated pressure at local coordinate s.
static double Default_Physical_Constant_Value
Static default value for the physical constants (all initialised to zero)
void fill_in_contribution_to_hessian_vector_products(Vector< double > const &Y, DenseMatrix< double > const &C, DenseMatrix< double > &product)
Compute the hessian tensor vector products required to perform continuation of bifurcations analytica...
NavierStokesSourceFctPt & source_fct_pt()
Access function for the source-function pointer.
virtual double dshape_and_dtest_eulerian_at_knot_nst(const unsigned &ipt, Shape &psi, DShape &dpsidx, Shape &test, DShape &dtestdx) const =0
Compute the shape functions and derivatives w.r.t. global coords at ipt-th integration point Return J...
void output(FILE *file_pt)
C-style output function: x,y,[z],u,v,[w],p in tecplot format. The default number of plot points is fi...
double kin_energy() const
Get integral of kinetic energy over element.
void point_output_data(const Vector< double > &s, Vector< double > &data)
Output solution in data vector at local cordinates s: x,y,z,u,v,p.
void output_fct(std::ostream &outfile, const unsigned &nplot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt)
Output exact solution specified via function pointer at a given time and at a given number of plot po...
const double & density_ratio() const
Density ratio for element: Element's density relative to the viscosity used in the definition of the ...
int & pinned_fp_pressure_eqn()
Global eqn number of pressure dof that's pinned in pressure adv diff problem.
NavierStokesSourceFctPt source_fct_pt() const
Access function for the source-function pointer. Const version.
void fill_in_contribution_to_residuals(Vector< double > &residuals)
Compute the element's residual Vector.
void(* NavierStokesBodyForceFctPt)(const double &time, const Vector< double > &x, Vector< double > &body_force)
Function pointer to body force function fct(t,x,f(x)) x is a Vector!
void store_strouhal_as_external_data(Data *strouhal_data_pt)
Function that tells us whether the period is stored as external data.
virtual void fill_in_generic_pressure_advection_diffusion_contribution_nst(Vector< double > &residuals, DenseMatrix< double > &jacobian, const unsigned &flag)
Compute the residuals for the associated pressure advection diffusion problem. Used by the Fp precond...
Vector< FpPressureAdvDiffRobinBCSpaceTimeElementBase * > Pressure_advection_diffusion_robin_element_pt
Storage for FaceElements that apply Robin BC for pressure adv diff equation used in Fp preconditioner...
double * st_pt() const
Pointer to Strouhal parameter (const. version)
virtual double p_nst(const unsigned &n_p) const =0
Pressure at local pressure "node" n_p Uses suitably interpolated value for hanging nodes.
virtual void fill_in_generic_dresidual_contribution_nst(double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam, const unsigned &flag)
Compute the derivatives of the residuals for the Navier-Stokes equations with respect to a parameter ...
void fill_in_contribution_to_jacobian_and_mass_matrix(Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix)
Add the element's contribution to its residuals vector, jacobian matrix and mass matrix.
double interpolated_du_dt_nst(const Vector< double > &s, const unsigned &i) const
Return FE representation of function value du_i/dt(s) at local coordinate s.
virtual double p_nst(const unsigned &t, const unsigned &n_p) const =0
Pressure at local pressure "node" n_p at time level t.
void output(std::ostream &outfile, const unsigned &n_plot)
Output function: x,y,[z],u,v,[w],p in tecplot format. Here, we use n_plot plot points in each coordin...
double * Viscosity_Ratio_pt
Pointer to the viscosity ratio (relative to the viscosity used in the definition of the Reynolds numb...
void fill_in_contribution_to_dresiduals_dparameter(double *const &parameter_pt, Vector< double > &dres_dparam)
Compute the element's residual Vector (differentiated w.r.t. a parameter)
bool is_strouhal_stored_as_external_data() const
Are we storing the Strouhal number as external data?
const Vector< double > & g() const
Vector of gravitational components.
NavierStokesPressureAdvDiffSourceFctPt & source_fct_for_pressure_adv_diff()
Access function for the source-function pointer for pressure advection diffusion (used for validation...
static int Pressure_not_stored_at_node
Static "magic" number that indicates that the pressure is not stored at a node.
virtual void get_body_force_nst(const double &time, const unsigned &ipt, const Vector< double > &s, const Vector< double > &x, Vector< double > &result)
Calculate the body force at a given time and local and/or Eulerian position. This function is virtual...
void output(std::ostream &outfile)
Output function: x,y,t,u,v,p in tecplot format. The default number of plot points is five.
void compute_error(std::ostream &outfile, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt, double &error, double &norm)
Validate against exact solution. Solution is provided via function pointer. Plot at a given number of...
double d_kin_energy_dt() const
Get integral of time derivative of kinetic energy over element.
double dissipation() const
Return integral of dissipation over element.
void fill_in_pressure_advection_diffusion_residuals(Vector< double > &residuals)
Compute the residuals for the associated pressure advection diffusion problem. Used by the Fp precond...
virtual void pshape_nst(const Vector< double > &s, Shape &psi, Shape &test) const =0
Compute the pressure shape and test functions at local coordinate s.
virtual unsigned npres_nst() const =0
Function to return number of pressure degrees of freedom.
virtual void fill_in_generic_pressure_advection_diffusion_contribution_nst(Vector< double > &residuals, DenseMatrix< double > &jacobian, const unsigned &flag)
Compute the residuals for the associated pressure advection diffusion problem. Used by the Fp precond...
double interpolated_u_nst(const Vector< double > &s, const unsigned &i) const
Return FE interpolated velocity u[i] at local coordinate s.
static Vector< double > Default_Gravity_vector
Static default value for the gravity vector.
virtual void fill_in_generic_residual_contribution_nst(Vector< double > &residuals, DenseMatrix< double > &jacobian, DenseMatrix< double > &mass_matrix, const unsigned &flag)
Compute the residuals for the Navier-Stokes equations. Flag=1 (or 0): do (or don't) compute the Jacob...
double(* NavierStokesSourceFctPt)(const double &time, const Vector< double > &x)
Function pointer to source function fct(t,x) (x is a Vector!)
void scalar_value_fct_paraview(std::ofstream &file_out, const unsigned &i, const unsigned &nplot, const double &time, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt) const
Write values of the i-th scalar field at the plot points. Needs to be implemented for each new specif...
const double & re_invfr() const
Global inverse Froude number.
void get_load(const Vector< double > &s, const Vector< double > &N, Vector< double > &load)
This implements a pure virtual function defined in the FSIFluidElement class. The function computes t...
double u_nst(const unsigned &t, const unsigned &n, const unsigned &i) const
Velocity i at local node n at timestep t (t=0: present; t>0: previous). Uses suitably interpolated va...
void fill_in_contribution_to_djacobian_and_dmass_matrix_dparameter(double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam)
Add the element's contribution to its residuals vector, jacobian matrix and mass matrix.
NavierStokesPressureAdvDiffSourceFctPt source_fct_for_pressure_adv_diff() const
Access function for the source-function pointer for pressure advection diffusion (used for validation...
unsigned nscalar_paraview() const
Number of scalars/fields output by this element. Reimplements broken virtual function in base class.
void get_traction(const Vector< double > &s, const Vector< double > &N, Vector< double > &traction_p, Vector< double > &traction_visc_n, Vector< double > &traction_visc_t)
Compute traction (on the viscous scale) exerted onto the fluid at local coordinate s,...
double re_st() const
Product of Reynolds and Strouhal number (=Womersley number)
void pin_all_non_pressure_dofs(std::map< Data *, std::vector< int >> &eqn_number_backup)
Pin all non-pressure dofs and backup eqn numbers.
void interpolated_u_nst(const Vector< double > &s, Vector< double > &velocity) const
Compute vector of FE interpolated velocity u at local coordinate s.
SpaceTimeNavierStokesEquations()
Constructor: NULL the body force and source function and make sure the ALE terms are included by defa...
virtual double dptest_eulerian(const Vector< double > &s, Shape &ptest, DShape &dptestdx) const =0
Pressure test functions and their derivs w.r.t. to global coords at local coordinate s (taken from ge...
double pressure_integral() const
Integral of pressure over element.
virtual void pshape_nst(const Vector< double > &s, Shape &psi) const =0
Compute the pressure shape functions at local coordinate s.
virtual unsigned u_index_nst(const unsigned &i) const
Return the index at which the i-th unknown velocity component is stored. The default value,...
virtual double get_source_nst(const double &time, const unsigned &ipt, const Vector< double > &x)
Calculate the source fct at a given time and Eulerian position.
void output_veloc(std::ostream &outfile, const unsigned &nplot, const unsigned &t)
Output function: x,y,t,u,v in tecplot format. Use n_plot points in each coordinate direction at times...
double interpolated_u_nst(const unsigned &t, const Vector< double > &s, const unsigned &i) const
Return FE interpolated velocity u[i] at local coordinate s time level, t. Purposely broken for space-...
void compute_error(std::ostream &outfile, FiniteElement::UnsteadyExactSolutionFctPt exact_soln_pt, const double &time, double &error, double &norm)
Validate against exact solution at given time Solution is provided via function pointer....
virtual void get_dresidual_dnodal_coordinates(RankThreeTensor< double > &dresidual_dnodal_coordinates)
Compute derivatives of elemental residual vector with respect to nodal coordinates....
virtual void fill_in_generic_dresidual_contribution_nst(double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam, DenseMatrix< double > &dmass_matrix_dparam, const unsigned &flag)
Compute the derivatives of the residuals for the Navier-Stokes equations with respect to a parameter ...
void get_vorticity(const Vector< double > &s, Vector< double > &vorticity) const
Compute the vorticity vector at local coordinate s.
void output(FILE *file_pt, const unsigned &n_plot)
C-style output function: x,y,[z],u,v,[w],p in tecplot format. Use n_plot points in each coordinate di...
void fill_in_contribution_to_djacobian_dparameter(double *const &parameter_pt, Vector< double > &dres_dparam, DenseMatrix< double > &djac_dparam)
Compute the element's residual Vector and the jacobian matrix Virtual function can be overloaded by h...
virtual void get_body_force_gradient_nst(const double &time, const unsigned &ipt, const Vector< double > &s, const Vector< double > &x, DenseMatrix< double > &d_body_force_dx)
Get gradient of body force term at (Eulerian) position x. This function is virtual to allow overloadi...
double u_nst(const unsigned &n, const unsigned &i) const
Velocity i at local node n. Uses suitably interpolated value for hanging nodes. The use of u_index_ns...
double(* NavierStokesPressureAdvDiffSourceFctPt)(const Vector< double > &x)
Function pointer to source function fct(x) for the pressure advection diffusion equation (only used d...
const double & viscosity_ratio() const
Viscosity ratio for element: Element's viscosity relative to the viscosity used in the definition of ...
virtual void fix_pressure(const unsigned &p_dof, const double &p_value)=0
Pin p_dof-th pressure dof and set it to value specified by p_value.
virtual double dpshape_eulerian(const Vector< double > &s, Shape &ppsi, DShape &dppsidx) const =0
Pressure shape functions and their derivs w.r.t. to global coords at local coordinate s (taken from g...
void output_pressure_advection_diffusion_robin_elements(std::ostream &outfile)
Output the FaceElements that apply the Robin boundary condition to the pressure advection diffusion p...
void strain_rate(const Vector< double > &s, DenseMatrix< double > &strain_rate) const
Strain-rate tensor: 1/2 (du_i/dx_j+du_j/dx_i)
double *& re_invfr_pt()
Pointer to global inverse Froude number.
virtual void get_source_gradient_nst(const double &time, const unsigned &ipt, const Vector< double > &x, Vector< double > &gradient)
Get gradient of source term at (Eulerian) position x. This function is virtual to allow overloading i...
static double Default_Physical_Ratio_Value
Static default value for the physical ratios (all are initialised to one)
void enable_ALE()
(Re-)enable ALE, i.e. take possible mesh motion into account when evaluating the time-derivative....
virtual void build_fp_press_adv_diff_robin_bc_element(const unsigned &face_index)=0
Build FaceElements that apply the Robin boundary condition to the pressure advection diffusion proble...
bool Strouhal_is_stored_as_external_data
Boolean to indicate whether or not the Strouhal value is stored as external data (if it's also an unk...
bool ALE_is_disabled
Boolean flag to indicate if ALE formulation is disabled when time-derivatives are computed....
void full_output(std::ostream &outfile, const unsigned &n_plot)
Full output function: x,y,t,u,v,p,du/dt,dv/dt,dissipation in tecplot format. Use n_plot plot points i...
Vector< double > *& g_pt()
Pointer to Vector of gravitational components.
void scalar_value_paraview(std::ofstream &file_out, const unsigned &i, const unsigned &nplot) const
Write values of the i-th scalar field at the plot points. Needs to be implemented for each new specif...
void fill_in_contribution_to_jacobian(Vector< double > &residuals, DenseMatrix< double > &jacobian)
Compute the element's residual Vector and the jacobian matrix Virtual function can be overloaded by h...
double interpolated_p_nst(const unsigned &t, const Vector< double > &s) const
Return FE interpolated pressure at local coordinate s at time level t.
void output_vorticity(std::ostream &outfile, const unsigned &nplot)
Output function: x,y,t,omega in tecplot format. nplot points in each coordinate direction.
std::string scalar_name_paraview(const unsigned &i) const
Name of the i-th scalar field. Default implementation returns V1 for the first one,...
double get_du_dt(const unsigned &n, const unsigned &i) const
i-th component of du/dt at local node n. Uses suitably interpolated value for hanging nodes....
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virtual void get_pressure_and_velocity_mass_matrix_diagonal(Vector< double > &press_mass_diag, Vector< double > &veloc_mass_diag, const unsigned &which_one=0)=0
Compute the diagonal of the velocity/pressure mass matrices. If which one=0, both are computed,...
virtual void build_fp_press_adv_diff_robin_bc_element(const unsigned &face_index)=0
Build FaceElements that apply the Robin boundary condition to the pressure advection diffusion proble...
virtual void fill_in_pressure_advection_diffusion_jacobian(Vector< double > &residuals, DenseMatrix< double > &jacobian)=0
Compute the residuals and Jacobian for the associated pressure advection diffusion problem....
virtual int p_nodal_index_nst() const =0
Return the index at which the pressure is stored if it is stored at the nodes. If not stored at the n...
virtual int p_local_eqn(const unsigned &n) const =0
Access function for the local equation number information for the pressure. p_local_eqn[n] = local eq...
virtual void pin_all_non_pressure_dofs(std::map< Data *, std::vector< int >> &eqn_number_backup)=0
Pin all non-pressure dofs and backup eqn numbers of all Data.
virtual void delete_pressure_advection_diffusion_robin_elements()=0
Delete the FaceElements that apply the Robin boundary condition to the pressure advection diffusion p...
virtual void fill_in_pressure_advection_diffusion_residuals(Vector< double > &residuals)=0
Compute the residuals for the associated pressure advection diffusion problem. Used by the Fp precond...
virtual int & pinned_fp_pressure_eqn()=0
Global eqn number of pressure dof that's pinned in pressure adv diff problem.
void initialise(const _Tp &__value)
Iterate over all values and set to the desired value.
Definition: Vector.h:167
std::string string(const unsigned &i)
Return the i-th string or "" if the relevant string hasn't been defined.
void dshape< 3 >(const double &s, double *DPsi)
Derivatives of 1D shape functions specialised to quadratic order (3 Nodes)
Definition: shape.h:820
void shape< 3 >(const double &s, double *Psi)
1D shape functions specialised to quadratic order (3 Nodes)
Definition: shape.h:810
void shape(const double &s, double *Psi)
Definition for 1D Lagrange shape functions. The value of all the shape functions at the local coordin...
Definition: shape.h:564
void dshape< 3 >(const double &s, double *DPsi)
Derivatives of 1D shape functions specialised to quadratic order (3 Nodes)
Definition: shape.h:645
void dshape< 2 >(const double &s, double *DPsi)
Derivatives of 1D shape functions specialised to linear order (2 Nodes)
Definition: shape.h:616
void shape< 3 >(const double &s, double *Psi)
1D shape functions specialised to quadratic order (3 Nodes)
Definition: shape.h:635
void shape< 2 >(const double &s, double *Psi)
1D shape functions specialised to linear order (2 Nodes)
Definition: shape.h:608
std::string to_string(T object, unsigned float_precision=8)
Conversion function that should work for anything with operator<< defined (at least all basic types).
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