single_layer_cubic_spine_mesh.template.cc

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// LIC// ====================================================================
// LIC// This file forms part of oomph-lib, the object-oriented,
// LIC// multi-physics finite-element library, available
// LIC// at http://www.oomph-lib.org.
// LIC//
// LIC// Copyright (C) 2006-2024 Matthias Heil and Andrew Hazel
// LIC//
// LIC// This library is free software; you can redistribute it and/or
// LIC// modify it under the terms of the GNU Lesser General Public
// LIC// License as published by the Free Software Foundation; either
// LIC// version 2.1 of the License, or (at your option) any later version.
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// LIC// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// LIC// Lesser General Public License for more details.
// LIC//
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// LIC//====================================================================
#ifndef OOMPH_SINGLE_LAYER_CUBIC_SPINE_MESH_TEMPLATE_CC
#define OOMPH_SINGLE_LAYER_CUBIC_SPINE_MESH_TEMPLATE_CC
 
#include "single_layer_cubic_spine_mesh.template.h"
#include "simple_cubic_mesh.template.cc"
 
namespace oomph
{
  //===========================================================================
  /// Constructor for spine 3D mesh: Pass number of elements in x-direction,
  /// number of elements in y-direction, number elements in z-direction,
  /// length, width and height of layer,
  /// and pointer to timestepper (defaults to Static timestepper).
  //===========================================================================
  template<class ELEMENT>
  SingleLayerCubicSpineMesh<ELEMENT>::SingleLayerCubicSpineMesh(
    const unsigned& nx,
    const unsigned& ny,
    const unsigned& nz,
    const double& lx,
    const double& ly,
    const double& h,
    TimeStepper* time_stepper_pt)
    : SimpleCubicMesh<ELEMENT>(nx, ny, nz, lx, ly, h, time_stepper_pt)
  {
    // Mesh can only be built with 3D Qelements.
    MeshChecker::assert_geometric_element<QElementGeometricBase, ELEMENT>(3);
 
    // Mesh can only be built with spine elements
    MeshChecker::assert_geometric_element<SpineFiniteElement, ELEMENT>(3);
 
    // Now build the single layer mesh on top of the existing mesh
    build_single_layer_mesh(time_stepper_pt);
  }
 
  //===========================================================================
  /// Helper function that actually builds the single-layer spine mesh
  /// based on the parameters set in the various constructors
  //===========================================================================
  template<class ELEMENT>
  void SingleLayerCubicSpineMesh<ELEMENT>::build_single_layer_mesh(
    TimeStepper* time_stepper_pt)
  {
    // Read out the number of elements in the x-direction
    unsigned n_x = this->Nx;
    // Read out the number of elements in the y-direction
    unsigned n_y = this->Ny;
    // Read out the number of elements in the z-direction
    unsigned n_z = this->Nz;
 
    // Allocate memory for the spines and fractions along spines
 
    // Read out number of linear points in the element
    unsigned n_p = dynamic_cast<ELEMENT*>(finite_element_pt(0))->nnode_1d();
 
    // Allocate store for the spines: (different in the case of periodic meshes
    // !!)
    Spine_pt.reserve(((n_p - 1) * n_x + 1) * ((n_p - 1) * n_y + 1));
 
    // Now we loop over all the elements and attach the spines
 
    // FIRST ELEMENT: Element 0
    // Loop over the nodes on the base of the element
    for (unsigned l1 = 0; l1 < n_p; l1++) // y loop over the nodes
    {
      for (unsigned l2 = 0; l2 < n_p; l2++) // x loop over the nodes
      {
        // Assign the new spine with length h
        Spine* new_spine_pt = new Spine(1.0);
        Spine_pt.push_back(new_spine_pt);
 
        // Get pointer to node
        SpineNode* nod_pt = element_node_pt(0, l2 + l1 * n_p);
        // Set the pointer to the spine
        nod_pt->spine_pt() = new_spine_pt;
        // Set the fraction
        nod_pt->fraction() = 0.0;
        // Pointer to the mesh that implements the update fct
        nod_pt->spine_mesh_pt() = this;
 
        // Loop vertically along the spine
        // Loop over the elements
        for (unsigned long k = 0; k < n_z; k++)
        {
          // Loop over the vertical nodes, apart from the first
          for (unsigned l3 = 1; l3 < n_p; l3++)
          {
            // Get pointer to node
            SpineNode* nod_pt =
              element_node_pt(k * n_x * n_y, l3 * n_p * n_p + l2 + l1 * n_p);
            // Set the pointer to the spine
            nod_pt->spine_pt() = new_spine_pt;
            // Set the fraction
            nod_pt->fraction() =
              (double(k) + double(l3) / double(n_p - 1)) / double(n_z);
            // Pointer to the mesh that implements the update fct
            nod_pt->spine_mesh_pt() = this;
          }
        }
      }
    }
 
 
    // LOOP OVER OTHER ELEMENTS IN THE FIRST ROW
    //-----------------------------------------
 
    // The procedure is the same but we have to identify the
    // before defined spines for not defining them two times
 
    for (unsigned j = 1; j < n_x; j++) // loop over the elements in the first
                                       // row
    {
      for (unsigned l1 = 0; l1 < n_p; l1++) // y loop over the nodes
      {
        // First we copy the last row of nodes into the
        // first row of the new element (and extend to the third dimension)
        for (unsigned l2 = 1; l2 < n_p; l2++) // x loop over the nodes
        {
          // Node j + i*np
          // Assign the new spine with unit length
          Spine* new_spine_pt = new Spine(1.0);
          Spine_pt.push_back(new_spine_pt);
 
          // Get pointer to node
          SpineNode* nod_pt = element_node_pt(j, l2 + l1 * n_p);
 
          // Set the pointer to the spine
          nod_pt->spine_pt() = new_spine_pt;
          // Set the fraction
          nod_pt->fraction() = 0.0;
          // Pointer to the mesh that implements the update fct
          nod_pt->spine_mesh_pt() = this;
 
          // Loop vertically along the spine
          // Loop over the elements
          for (unsigned long k = 0; k < n_z; k++)
          {
            // Loop over the vertical nodes, apart from the first
            for (unsigned l3 = 1; l3 < n_p; l3++)
            {
              // Get pointer to node
              SpineNode* nod_pt = element_node_pt(
                j + k * n_x * n_y, l3 * n_p * n_p + l2 + l1 * n_p);
              // Set the pointer to the spine
              nod_pt->spine_pt() = new_spine_pt;
              // Set the fraction
              nod_pt->fraction() =
                (double(k) + double(l3) / double(n_p - 1)) / double(n_z);
              // Pointer to the mesh that implements the update fct
              nod_pt->spine_mesh_pt() = this;
            }
          }
        }
      }
    }
 
    // REST OF THE ELEMENTS
    // Now we loop over the rest of the elements.
    // We will separate the first of each row being al the rest equal
    for (unsigned long i = 1; i < n_y; i++)
    {
      // FIRST ELEMENT OF THE ROW
 
      // First line of nodes is copied from the element of the bottom
      for (unsigned l1 = 1; l1 < n_p; l1++) // y loop over the nodes
      {
        for (unsigned l2 = 0; l2 < n_p; l2++) // x loop over the nodes
        {
          // Node j + i*np
          // Assign the new spine with unit length
          Spine* new_spine_pt = new Spine(1.0);
          Spine_pt.push_back(new_spine_pt);
 
 
          // Get pointer to node
          // Element i*n_x; node l2 + l1*n_p
          SpineNode* nod_pt = element_node_pt(i * n_x, l2 + l1 * n_p);
          // Set the pointer to the spine
          nod_pt->spine_pt() = new_spine_pt;
          // Set the fraction
          nod_pt->fraction() = 0.0;
          // Pointer to the mesh that implements the update fct
          nod_pt->spine_mesh_pt() = this;
 
          // Loop vertically along the spine
          // Loop over the elements
          for (unsigned long k = 0; k < n_z; k++)
          {
            // Loop over the vertical nodes, apart from the first
            for (unsigned l3 = 1; l3 < n_p; l3++)
            {
              // Get pointer to node
              SpineNode* nod_pt = element_node_pt(
                i * n_x + k * n_x * n_y, l3 * n_p * n_p + l2 + l1 * n_p);
              // Set the pointer to the spine
              nod_pt->spine_pt() = new_spine_pt;
              // Set the fraction
              nod_pt->fraction() =
                (double(k) + double(l3) / double(n_p - 1)) / double(n_z);
              // Pointer to the mesh that implements the update fct
              nod_pt->spine_mesh_pt() = this;
            }
          }
        }
      }
 
 
      // REST OF THE ELEMENTS OF THE ROW
      for (unsigned j = 1; j < n_x; j++)
      {
        // First line of nodes is copied from the element of the bottom
        for (unsigned l1 = 1; l1 < n_p; l1++) // y loop over the nodes
        {
          for (unsigned l2 = 1; l2 < n_p; l2++) // x loop over the nodes
          {
            // Node j + i*np
            // Assign the new spine with unit length
            Spine* new_spine_pt = new Spine(1.0);
            Spine_pt.push_back(new_spine_pt);
 
 
            // Get pointer to node
            // Element j + i*n_x; node l2 + l1*n_p
            SpineNode* nod_pt = element_node_pt(j + i * n_x, l2 + l1 * n_p);
            // Set the pointer to the spine
            nod_pt->spine_pt() = new_spine_pt;
            // Set the fraction
            nod_pt->fraction() = 0.0;
            // Pointer to the mesh that implements the update fct
            nod_pt->spine_mesh_pt() = this;
 
            // Loop vertically along the spine
            // Loop over the elements
            for (unsigned long k = 0; k < n_z; k++)
            {
              // Loop over the vertical nodes, apart from the first
              for (unsigned l3 = 1; l3 < n_p; l3++)
              {
                // Get pointer to node
                SpineNode* nod_pt = element_node_pt(
                  j + i * n_x + k * n_x * n_y, l3 * n_p * n_p + l2 + l1 * n_p);
                // Set the pointer to the spine
                nod_pt->spine_pt() = new_spine_pt;
                // Set the fraction
                nod_pt->fraction() =
                  (double(k) + double(l3) / double(n_p - 1)) / double(n_z);
                // Pointer to the mesh that implements the update fct
                nod_pt->spine_mesh_pt() = this;
              }
            }
          }
        }
      }
    }
  }
 
} // namespace oomph
#endif