preconditioner.h
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26 // Include guards
27 #ifndef OOMPH_PRECONDITION_HEADER
28 #define OOMPH_PRECONDITION_HEADER
29 
30 
31 // Config header generated by autoconfig
32 #ifdef HAVE_CONFIG_H
33 #include <oomph-lib-config.h>
34 #endif
35 
36 #include "matrices.h"
37 
38 
39 namespace oomph
40 {
41  // Forward declaration of block preconditioners (for turn into subs.)
42  template<typename MATRIX>
43  class BlockPreconditioner;
44 
45  // Forward declaration of problem class (for obsolete setup function)
46  class Problem;
47 
48  //=============================================================================
49  /// Preconditioner base class. Gives an interface to call all other
50  /// preconditioners through and stores the matrix and communicator
51  /// pointers. All preconditioners should be derived from this class.
52  //=============================================================================
54  {
55  public:
56  /// Constructor
59  Stream_pt(0),
60  Matrix_pt(0),
61  Comm_pt(0),
62  Setup_time(0){};
63 
64  /// Broken copy constructor
65  Preconditioner(const Preconditioner&) = delete;
66 
67  /// Broken assignment operator
68  void operator=(const Preconditioner&) = delete;
69 
70  /// Destructor (empty)
71  virtual ~Preconditioner() {}
72 
73  /// Apply the preconditioner. Pure virtual generic interface
74  /// function. This method should apply the preconditioner operator to the
75  /// vector r and return the vector z.
76  virtual void preconditioner_solve(const DoubleVector& r,
77  DoubleVector& z) = 0;
78 
79  /// Apply the preconditioner. Pure virtual generic interface
80  /// function. This method should apply the preconditioner operator to the
81  /// vector r and return the vector z. (broken virtual)
83  DoubleVector& z)
84  {
85  // Throw an error
86  throw OomphLibError("This function hasn't been implemented yet!",
87  OOMPH_CURRENT_FUNCTION,
88  OOMPH_EXCEPTION_LOCATION);
89  }
90 
91  /// Setup the preconditioner: store the matrix pointer and the
92  /// communicator pointer then call preconditioner specific setup()
93  /// function.
95  {
96  // Store matrix pointer
98 
99  // Extract and store communicator pointer
100  DistributableLinearAlgebraObject* dist_obj_pt =
102  if (dist_obj_pt != 0)
103  {
104  set_comm_pt(dist_obj_pt->distribution_pt()->communicator_pt());
105  }
106  else
107  {
108  set_comm_pt(0);
109  }
110 
111  double setup_time_start = TimingHelpers::timer();
112  setup();
113  double setup_time_finish = TimingHelpers::timer();
114  Setup_time = setup_time_finish - setup_time_start;
115  }
116 
117  /// Compatability layer for old preconditioners where problem
118  /// pointers were needed. The problem pointer is only used to get a
119  /// communicator pointer.
120  void setup(const Problem* problem_pt, DoubleMatrixBase* matrix_pt)
121  {
123  setup(matrix_pt);
124  }
125 
126  /// Set up the block preconditioner quietly!
128  {
129  // Set the appropriate (silencing) boolean to true
131  } // End of enable_silent_preconditioner_setup
132 
133 
134  /// Be verbose in the block preconditioner setup
136  {
137  // Set the appropriate (silencing) boolean to false
139  } // End of disable_silent_preconditioner_setup
140 
141 
142  /// Setup the preconditioner. Pure virtual generic interface
143  /// function.
144  virtual void setup() = 0;
145 
146  /// Clean up memory (empty). Generic interface function.
147  virtual void clean_up_memory() {}
148 
149  /// Get function for matrix pointer.
150  virtual DoubleMatrixBase* matrix_pt() const
151  {
152 #ifdef PARANOID
153  if (Matrix_pt == 0)
154  {
155  std::ostringstream error_msg;
156  error_msg << "Matrix pointer is null.";
157  throw OomphLibError(
158  error_msg.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
159  }
160 #endif
161  return Matrix_pt;
162  }
163 
164  /// Set the matrix pointer.
166  {
168  }
169 
170  /// Get function for comm pointer.
171  virtual const OomphCommunicator* comm_pt() const
172  {
173  // If we are using MPI then the comm pointer should not be null.
174 #ifdef OOMPH_HAS_MPI
175 #ifdef PARANOID
176  if (Comm_pt == 0)
177  {
178  std::ostringstream error_msg;
179  error_msg << "Tried to access a null communicator pointer. This might "
180  "mean you are\n"
181  << "trying to use it in a non-parallel case. Or it might "
182  "mean you haven't\n"
183  << "set it properly.";
184  throw OomphLibError(
185  error_msg.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
186  }
187 #endif
188 #endif
189  return Comm_pt;
190  }
191 
192  /// Set the communicator pointer
193  virtual void set_comm_pt(const OomphCommunicator* const comm_pt)
194  {
195  Comm_pt = comm_pt;
196  }
197 
198  /// Returns the time to setup the preconditioner.
199  double setup_time() const
200  {
201  return Setup_time;
202  }
203 
204  /// Virtual interface function for making a preconditioner a subsidiary
205  /// of a block preconditioner. By default nothing is needed, but if this
206  /// preconditioner is also a block preconditioner then things need to
207  /// happen. There's an assumption here that the block preconditioner will
208  /// be in CR form but since that assumption is hard coded all over
209  /// BlockPreconditioner we're safe.
211  BlockPreconditioner<CRDoubleMatrix>* master_block_prec_pt,
212  const Vector<unsigned>& doftype_in_master_preconditioner_coarse)
213  {
214  }
215 
216  /// Virtual interface function for making a preconditioner a subsidiary
217  /// of a block preconditioner. By default nothing is needed, but if this
218  /// preconditioner is also a block preconditioner then things need to
219  /// happen. Version for coarsening dof-types.
221  BlockPreconditioner<CRDoubleMatrix>* master_block_prec_pt,
222  const Vector<unsigned>& doftype_in_master_preconditioner_coarse,
223  const Vector<Vector<unsigned>>& doftype_coarsen_map_coarse)
224  {
225  }
226 
227  protected:
228  /// Boolean to indicate whether or not the build should be done silently
230 
231  /// Pointer to the output stream -- defaults to std::cout
232  std::ostream* Stream_pt;
233 
234  private:
235  /// Storage for a pointer to the matrix.
237 
238  /// Storage for a pointer to the communicator. Null
239  /// if the preconditioner should not be distributed.
241 
242  /// The time it takes to set up this preconditioner.
243  double Setup_time;
244 
245  }; // Preconditioner
246 
247 
248  //=============================================================================
249  /// The Identity Preconditioner
250  //=============================================================================
252  {
253  public:
254  // Constructor - nothing to construct
256 
257  /// Broken copy constructor
259 
260  /// Broken assignment operator
261  void operator=(const IdentityPreconditioner&) = delete;
262 
263  /// Destructor (empty)
265 
266  /// setup method - just sets the distribution
267  virtual void setup()
268  {
269  // first attempt to cast to DistributableLinearAlgebraObject
270  DistributableLinearAlgebraObject* dist_matrix_pt =
272 
273  // if it is a distributable matrix
274  if (dist_matrix_pt != 0)
275  {
276  // store the distribution
277  this->build_distribution(dist_matrix_pt->distribution_pt());
278  }
279  // else it is not a distributable matrix
280  else
281  {
282  // # of rows in the matrix
283  unsigned n_row = matrix_pt()->nrow();
284 
285  LinearAlgebraDistribution dist(comm_pt(), n_row, false);
286  this->build_distribution(dist);
287  }
288  }
289 
290  /// Apply the preconditioner. This method should apply the
291  /// preconditioner operator to the vector r and return the vector z.
292  virtual void preconditioner_solve(const DoubleVector& r, DoubleVector& z)
293  {
294 #ifdef PARANOID
295  if (*r.distribution_pt() != *this->distribution_pt())
296  {
297  std::ostringstream error_message_stream;
298  error_message_stream
299  << "The r vector must have the same distribution as the "
300  "preconditioner. "
301  << "(this is the same as the matrix passed to setup())";
302  throw OomphLibError(error_message_stream.str(),
303  OOMPH_CURRENT_FUNCTION,
304  OOMPH_EXCEPTION_LOCATION);
305  }
306  if (z.built())
307  {
308  if (*z.distribution_pt() != *this->distribution_pt())
309  {
310  std::ostringstream error_message_stream;
311  error_message_stream
312  << "The z vector distribution has been setup; it must have the "
313  << "same distribution as the r vector (and preconditioner).";
314  throw OomphLibError(error_message_stream.str(),
315  OOMPH_CURRENT_FUNCTION,
316  OOMPH_EXCEPTION_LOCATION);
317  }
318  }
319 #endif
320 
321  // apply
322  z = r;
323  }
324 
325 
326  /// Apply the preconditioner. This method should apply the
327  /// preconditioner operator to the vector r and return the vector z.
329  {
330  // Applying the preconditioner to the transposed system is exactly the
331  // same as applying the preconditioner to the original system
332  preconditioner_solve(r, z);
333  }
334  };
335 } // namespace oomph
336 
337 #endif
Base class for any linear algebra object that is distributable. Just contains storage for the LinearA...
LinearAlgebraDistribution * distribution_pt() const
access to the LinearAlgebraDistribution
void build_distribution(const LinearAlgebraDistribution *const dist_pt)
setup the distribution of this distributable linear algebra object
Abstract base class for matrices of doubles – adds abstract interfaces for solving,...
Definition: matrices.h:261
virtual unsigned long nrow() const =0
Return the number of rows of the matrix.
A vector in the mathematical sense, initially developed for linear algebra type applications....
Definition: double_vector.h:58
bool built() const
The Identity Preconditioner.
void preconditioner_solve_transpose(const DoubleVector &r, DoubleVector &z)
Apply the preconditioner. This method should apply the preconditioner operator to the vector r and re...
IdentityPreconditioner(const IdentityPreconditioner &)=delete
Broken copy constructor.
virtual ~IdentityPreconditioner()
Destructor (empty)
void operator=(const IdentityPreconditioner &)=delete
Broken assignment operator.
virtual void setup()
setup method - just sets the distribution
virtual void preconditioner_solve(const DoubleVector &r, DoubleVector &z)
Apply the preconditioner. This method should apply the preconditioner operator to the vector r and re...
Describes the distribution of a distributable linear algebra type object. Typically this is a contain...
OomphCommunicator * communicator_pt() const
const access to the communicator pointer
An oomph-lib wrapper to the MPI_Comm communicator object. Just contains an MPI_Comm object (which is ...
Definition: communicator.h:54
An OomphLibError object which should be thrown when an run-time error is encountered....
Preconditioner base class. Gives an interface to call all other preconditioners through and stores th...
double Setup_time
The time it takes to set up this preconditioner.
DoubleMatrixBase * Matrix_pt
Storage for a pointer to the matrix.
void setup(DoubleMatrixBase *matrix_pt)
Setup the preconditioner: store the matrix pointer and the communicator pointer then call preconditio...
virtual void turn_into_subsidiary_block_preconditioner(BlockPreconditioner< CRDoubleMatrix > *master_block_prec_pt, const Vector< unsigned > &doftype_in_master_preconditioner_coarse)
Virtual interface function for making a preconditioner a subsidiary of a block preconditioner....
virtual void preconditioner_solve_transpose(const DoubleVector &r, DoubleVector &z)
Apply the preconditioner. Pure virtual generic interface function. This method should apply the preco...
void disable_silent_preconditioner_setup()
Be verbose in the block preconditioner setup.
std::ostream * Stream_pt
Pointer to the output stream – defaults to std::cout.
virtual void set_comm_pt(const OomphCommunicator *const comm_pt)
Set the communicator pointer.
virtual void clean_up_memory()
Clean up memory (empty). Generic interface function.
void operator=(const Preconditioner &)=delete
Broken assignment operator.
virtual DoubleMatrixBase * matrix_pt() const
Get function for matrix pointer.
void setup(const Problem *problem_pt, DoubleMatrixBase *matrix_pt)
Compatability layer for old preconditioners where problem pointers were needed. The problem pointer i...
Preconditioner()
Constructor.
double setup_time() const
Returns the time to setup the preconditioner.
const OomphCommunicator * Comm_pt
Storage for a pointer to the communicator. Null if the preconditioner should not be distributed.
void enable_silent_preconditioner_setup()
Set up the block preconditioner quietly!
virtual ~Preconditioner()
Destructor (empty)
Preconditioner(const Preconditioner &)=delete
Broken copy constructor.
virtual void preconditioner_solve(const DoubleVector &r, DoubleVector &z)=0
Apply the preconditioner. Pure virtual generic interface function. This method should apply the preco...
bool Silent_preconditioner_setup
Boolean to indicate whether or not the build should be done silently.
virtual void turn_into_subsidiary_block_preconditioner(BlockPreconditioner< CRDoubleMatrix > *master_block_prec_pt, const Vector< unsigned > &doftype_in_master_preconditioner_coarse, const Vector< Vector< unsigned >> &doftype_coarsen_map_coarse)
Virtual interface function for making a preconditioner a subsidiary of a block preconditioner....
virtual const OomphCommunicator * comm_pt() const
Get function for comm pointer.
virtual void set_matrix_pt(DoubleMatrixBase *matrix_pt)
Set the matrix pointer.
virtual void setup()=0
Setup the preconditioner. Pure virtual generic interface function.
////////////////////////////////////////////////////////////////// //////////////////////////////////...
Definition: problem.h:154
void obsolete()
Output warning message.
double timer()
returns the time in seconds after some point in past
//////////////////////////////////////////////////////////////////// ////////////////////////////////...