general_purpose_space_time_block_preconditioner.cc
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26 // Oomph-lib headers
28 
29 // Header file
31 
32 /// /////////////////////////////////////////////////////////////////////////
33 /// /////////////////////////////////////////////////////////////////////////
34 /// /////////////////////////////////////////////////////////////////////////
35 
36 namespace oomph
37 {
38  //============================================================================
39  /// Set up the exact preconditioner
40  //============================================================================
41  template<typename MATRIX>
43  {
44  // Clean the memory
45  this->clean_up_memory();
46 
47  // Subsidiary preconditioners don't really need the meshes
48  if (this->is_master_block_preconditioner())
49  {
50 #ifdef PARANOID
51  if (this->gp_nmesh() == 0)
52  {
53  std::ostringstream err_msg;
54  err_msg << "There are no meshes set.\n"
55  << "Did you remember to call add_mesh(...)?";
56  throw OomphLibError(
57  err_msg.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
58  }
59 #endif
60 
61  // Set all meshes if this is master block preconditioner
62  this->gp_preconditioner_set_all_meshes();
63  }
64 
65  // Initialise the memory usage variable
66  Memory_usage_in_bytes = 0.0;
67 
68  // If we're meant to build silently
69  if (this->Silent_preconditioner_setup == true)
70  {
71  // Store the output stream pointer
72  this->Stream_pt = oomph_info.stream_pt();
73 
74  // Now set the oomph_info stream pointer to the null stream to
75  // disable all possible output
77  }
78 
79  // Set up the block look up schemes
80  this->gp_preconditioner_block_setup();
81 
82  // Number of block types
83  unsigned n_block_types = this->nblock_types();
84 
85  // Fill in any null subsidiary preconditioners
86  this->fill_in_subsidiary_preconditioners(n_block_types);
87 
88  // The total time for setting up the subsidiary preconditioners
89  double t_subsidiary_setup_total = 0.0;
90 
91  // Stores the blocks we want to extract
92  VectorMatrix<BlockSelector> required_blocks(n_block_types, n_block_types);
93 
94  // Boolean indicating if we want the block, stored for readability.
95  const bool want_block = true;
96 
97  // Loop over the block rows
98  for (unsigned i = 0; i < n_block_types; i++)
99  {
100  // Loop over the block columns
101  for (unsigned j = 0; j < n_block_types; j++)
102  {
103  // Indicate that we want this block
104  required_blocks[i][j].select_block(i, j, want_block);
105  }
106  } // for (unsigned i=0;i<n_block_types;i++)
107 
108  // Get the start time
109  double t_extract_start = TimingHelpers::timer();
110 
111  // Get the concatenated blocks
112  CRDoubleMatrix full_matrix = this->get_concatenated_block(required_blocks);
113 
114  // The total time for extracting all the blocks from the "global" matrix
115  double t_extraction_total = (TimingHelpers::timer() - t_extract_start);
116 
117  // Get the start time
118  double t_subsidiary_setup_start = TimingHelpers::timer();
119 
120  // It's a block preconditioner so pass it a pointer to the global matrix!
121  this->Subsidiary_preconditioner_pt[0]->setup(&full_matrix);
122 
123  // Update the timing total
124  t_subsidiary_setup_total +=
125  (TimingHelpers::timer() - t_subsidiary_setup_start);
126 
127  // Remember that the preconditioner has been set up
128  Preconditioner_has_been_setup = true;
129 
130  // If we're meant to build silently, reassign the oomph stream pointer
131  if (this->Silent_preconditioner_setup == true)
132  {
133  // Store the output stream pointer
134  oomph_info.stream_pt() = this->Stream_pt;
135 
136  // Reset our own stream pointer
137  this->Stream_pt = 0;
138  }
139 
140  // Tell the user
141  oomph_info << "Total block extraction time [sec]: " << t_extraction_total
142  << "\nTotal subsidiary preconditioner setup time [sec]: "
143  << t_subsidiary_setup_total << std::endl;
144 
145  // Do we need to doc. the memory statistics?
146  // NOTE: We're going to assume that either:
147  // (1) GMRES is used as a subsidiary block preconditioner (preconditioned
148  // by the Navier-Stokes subsidiary block preconditioner), or;
149  // (2) SuperLU is used as the subsidiary preconditioner.
150  if (Compute_memory_statistics)
151  {
152  // How many rows are there in the global Jacobian?
153  unsigned n_row = this->matrix_pt()->nrow();
154 
155  // How many nonzeros are there in the global Jacobian?
156  unsigned n_nnz = this->matrix_pt()->nnz();
157 
158  // Add in the subsidiary preconditioners contribution
159  double total_memory_usage_for_setup_phase =
160  dynamic_cast<SuperLUPreconditioner*>(
161  this->Subsidiary_preconditioner_pt[0])
162  ->get_total_memory_needed_for_superlu();
163 
164  // Add in the global Jacobian contribution
165  total_memory_usage_for_setup_phase +=
166  ((2 * ((n_row + 1) * sizeof(int))) +
167  (n_nnz * (sizeof(int) + sizeof(double))));
168 
169  // How much memory have we used in the subsidiary preconditioners?
170  oomph_info << "\nTotal amount of memory being used after setup (MB): "
171  << total_memory_usage_for_setup_phase / 1.0e+06 << "\n"
172  << std::endl;
173  } // if (Compute_memory_statistics)
174  } // End of setup
175 
176 
177  //=============================================================================
178  /// Preconditioner solve for the exact preconditioner
179  //=============================================================================
180  template<typename MATRIX>
182  const DoubleVector& r, DoubleVector& z)
183  {
184  // Vector of vectors for each section of residual vector
185  Vector<DoubleVector> block_r;
186 
187  // Rearrange the vector r into the vector of block vectors block_r
188  this->get_block_vectors(r, block_r);
189 
190  // Allocate space for the properly rearranged RHS vector
191  DoubleVector rhs_reordered;
192 
193  // Concatenate the DoubleVectors together
194  DoubleVectorHelpers::concatenate(block_r, rhs_reordered);
195 
196  // Allocate space for the rearranged solution vector
197  DoubleVector z_reordered;
198 
199  // Solve the whole system exactly
200  this->Subsidiary_preconditioner_pt[0]->preconditioner_solve(rhs_reordered,
201  z_reordered);
202 
203  // Vector of vectors for each section of solution vector (copy the RHS
204  // block vector to get the sizing and distributions right)
205  Vector<DoubleVector> block_z(block_r);
206 
207  // Split the solution vector into blocks
208  DoubleVectorHelpers::split(z_reordered, block_z);
209 
210  // Copy the solution from the block vector block_z back into z
211  this->return_block_vectors(block_z, z);
212  } // End of preconditioner_solve
213 
214  //============================================================================
215  /// Set up the block triangular preconditioner
216  //============================================================================
217  template<typename MATRIX>
219  {
220  // Clean the memory
221  this->clean_up_memory();
222 
223  // Subsidiary preconditioners don't really need the meshes
224  if (this->is_master_block_preconditioner())
225  {
226 #ifdef PARANOID
227  if (this->gp_nmesh() == 0)
228  {
229  std::ostringstream err_msg;
230  err_msg << "There are no meshes set.\n"
231  << "Did you remember to call add_mesh(...)?";
232  throw OomphLibError(
233  err_msg.str(), OOMPH_CURRENT_FUNCTION, OOMPH_EXCEPTION_LOCATION);
234  }
235 #endif
236 
237  // Set all meshes if this is master block preconditioner
238  this->gp_preconditioner_set_all_meshes();
239  }
240 
241  // Initialise the memory usage variable
242  Memory_usage_in_bytes = 0.0;
243 
244  // If we're meant to build silently
245  if (this->Silent_preconditioner_setup == true)
246  {
247  // Store the output stream pointer
248  this->Stream_pt = oomph_info.stream_pt();
249 
250  // Now set the oomph_info stream pointer to the null stream to
251  // disable all possible output
253  }
254 
255  // Set up the block look up schemes
256  this->gp_preconditioner_block_setup();
257 
258  // Number of block types
259  unsigned n_block_types = this->nblock_types();
260 
261  // Storage for the off diagonal matrix vector products
262  Off_diagonal_matrix_vector_products.resize(n_block_types, n_block_types, 0);
263 
264  // Fill in any null subsidiary preconditioners
265  this->fill_in_subsidiary_preconditioners(n_block_types);
266 
267  // The total time for extracting all the blocks from the "global" matrix
268  double t_extraction_total = 0.0;
269 
270  // The total time for setting up the subsidiary preconditioners
271  double t_subsidiary_setup_total = 0.0;
272 
273  // The total time for setting up the matrix-vector products
274  double t_mvp_setup_total = 0.0;
275 
276  // Build the preconditioners and matrix vector products
277  for (unsigned i = 0; i < n_block_types; i++)
278  {
279  // See if the i-th subsidiary preconditioner is a block preconditioner
280  if (dynamic_cast<BlockPreconditioner<CRDoubleMatrix>*>(
281  this->Subsidiary_preconditioner_pt[i]) != 0)
282  {
283  // If we need to compute the memory statistics
284  if (Compute_memory_statistics)
285  {
286  // If we're dealing with a GMRES block preconditioner
287  if (dynamic_cast<GMRESBlockPreconditioner*>(
288  this->Subsidiary_preconditioner_pt[i]))
289  {
290  // Enable the doc-ing of memory usage in the GMRES block
291  // preconditioner
292  dynamic_cast<GMRESBlockPreconditioner*>(
293  this->Subsidiary_preconditioner_pt[i])
294  ->enable_doc_memory_usage();
295  }
296  } // if (Compute_memory_statistics)
297 
298  // Get the start time
299  double t_subsidiary_setup_start = TimingHelpers::timer();
300 
301  // It's a block preconditioner so pass it a pointer to the global
302  // matrix!
303  this->Subsidiary_preconditioner_pt[i]->setup(this->matrix_pt());
304 
305  // Get the end time
306  double t_subsidiary_setup_end = TimingHelpers::timer();
307 
308  // Update the timing total
309  t_subsidiary_setup_total +=
310  (t_subsidiary_setup_end - t_subsidiary_setup_start);
311  }
312  // It's just a preconditioner so pass it a deep copy of the block!
313  else
314  {
315  // Get the start time
316  double t_extract_start = TimingHelpers::timer();
317 
318  // Grab the i-th diagonal block
319  CRDoubleMatrix block_matrix = this->get_block(i, i);
320 
321  // Get the end time
322  double t_extract_end = TimingHelpers::timer();
323 
324  // Update the timing total
325  t_extraction_total += (t_extract_end - t_extract_start);
326 
327  // Get the start time
328  double t_subsidiary_setup_start = TimingHelpers::timer();
329 
330  // Set up the i-th subsidiary preconditioner with this block
331  this->Subsidiary_preconditioner_pt[i]->setup(&block_matrix);
332 
333  // Get the end time
334  double t_subsidiary_setup_end = TimingHelpers::timer();
335 
336  // Update the timing total
337  t_subsidiary_setup_total +=
338  (t_subsidiary_setup_end - t_subsidiary_setup_start);
339  }
340 
341  // The index of the lower column bound
342  unsigned l;
343 
344  // The index of the upper column bound
345  unsigned u;
346 
347  // If we're using the upper triangular form of the preconditioner
348  if (Upper_triangular)
349  {
350  // The lower bound column bound
351  l = i + 1;
352 
353  // If the block bandwidth has been provided
354  if (Block_bandwidth >= 0)
355  {
356  // The upper bound is the last nonzero block column
357  u = std::min(n_block_types, l + Block_bandwidth);
358  }
359  // Default case; loop over all the block columns
360  else
361  {
362  // The upper bound is the last column
363  u = n_block_types;
364  }
365  }
366  // If we're using the lower triangular form of the preconditioner
367  else
368  {
369  // The upper bound column bound
370  u = i;
371 
372  // If the block bandwidth has been provided
373  if (Block_bandwidth >= 0)
374  {
375  // The lower bound is the last nonzero block column. The explicit
376  // casting is a bit over the top but it's better to be safe than
377  // sorry...
378  l = std::max(0, int(int(u) - Block_bandwidth));
379  }
380  // Default case; loop over all the block columns
381  else
382  {
383  // The lower bound is the first column
384  l = 0;
385  }
386  } // for (unsigned i=0;i<nblock_types;i++)
387 
388  // Loop over the chosen block columns
389  for (unsigned j = l; j < u; j++)
390  {
391  // Get the start time
392  double t_extract_start = TimingHelpers::timer();
393 
394  // Get the (i,j)-th block matrix
395  CRDoubleMatrix block_matrix = this->get_block(i, j);
396 
397  // Do we need to doc. the memory statistics?
398  if (Compute_memory_statistics)
399  {
400  // How many rows are there in this block?
401  unsigned n_row = block_matrix.nrow();
402 
403  // How many nonzeros are there in this block?
404  unsigned n_nnz = block_matrix.nnz();
405 
406  // Compute the memory usage. The only memory overhead here (for the
407  // setup phase) is the storage of the sub-diagonal blocks for the MVPs
408  Memory_usage_in_bytes += ((2 * ((n_row + 1) * sizeof(int))) +
409  (n_nnz * (sizeof(int) + sizeof(double))));
410  }
411 
412  // Get the end time
413  double t_extract_end = TimingHelpers::timer();
414 
415  // Update the timing total
416  t_extraction_total += (t_extract_end - t_extract_start);
417 
418  // Get the start time
419  double t_mvp_start = TimingHelpers::timer();
420 
421  // Copy the block into a "multiplier" class. If trilinos is being
422  // used this should also be faster than oomph-lib's multiphys.
423  Off_diagonal_matrix_vector_products(i, j) = new MatrixVectorProduct();
424 
425  // Set the damn thing up
426  this->setup_matrix_vector_product(
427  Off_diagonal_matrix_vector_products(i, j), &block_matrix, j);
428 
429  // Get the end time
430  double t_mvp_end = TimingHelpers::timer();
431 
432  // Update the timing total
433  t_mvp_setup_total += (t_mvp_end - t_mvp_start);
434  }
435  } // for (unsigned i=0;i<n_block_types;i++)
436 
437  // Remember that the preconditioner has been set up
438  Preconditioner_has_been_setup = true;
439 
440  // If we're meant to build silently, reassign the oomph stream pointer
441  if (this->Silent_preconditioner_setup == true)
442  {
443  // Store the output stream pointer
444  oomph_info.stream_pt() = this->Stream_pt;
445 
446  // Reset our own stream pointer
447  this->Stream_pt = 0;
448  }
449 
450  // Tell the user
451  oomph_info << "Total block extraction time [sec]: " << t_extraction_total
452  << "\nTotal subsidiary preconditioner setup time [sec]: "
453  << t_subsidiary_setup_total
454  << "\nTotal matrix-vector product setup time [sec]: "
455  << t_mvp_setup_total << std::endl;
456 
457  // Do we need to doc. the memory statistics?
458  // NOTE: We're going to assume that either:
459  // (1) GMRES is used as a subsidiary block preconditioner (preconditioned
460  // by the Navier-Stokes subsidiary block preconditioner), or;
461  // (2) SuperLU is used as the subsidiary preconditioner.
462  if (Compute_memory_statistics)
463  {
464  // Allocate space for the total memory usage
465  double total_memory_usage_for_setup_phase = 0.0;
466 
467  // How many rows are there in the global Jacobian?
468  unsigned n_row = this->matrix_pt()->nrow();
469 
470  // How many nonzeros are there in the global Jacobian?
471  unsigned n_nnz = this->matrix_pt()->nnz();
472 
473  // Storage for the memory usage of the global system matrix.
474  // NOTE: This calculation is done by taking into account the storage
475  // scheme for a compressed row matrix
476  double memory_usage_for_storage_of_global_jacobian_in_bytes =
477  ((2 * ((n_row + 1) * sizeof(int))) +
478  (n_nnz * (sizeof(int) + sizeof(double))));
479 
480  // Allocate storage for the memory usage of the subsidiary preconditioner
481  double memory_usage_for_subsidiary_preconditioner_in_bytes = 0.0;
482 
483  // Allocate storage for the memory usage of the Navier-Stokes subsidiary
484  // block preconditioner (if it's used, that is)
485  double memory_usage_for_nssbp_preconditioner_in_bytes = 0.0;
486 
487  // Boolean to indicate whether we've issue a warning about not being
488  // able to compute memory statistics. If it doesn't work with one
489  // block, chances are it won't work with any of them, so don't be a
490  // pain in the gluteus maximus and just spit out the warning once
491  bool have_issued_warning_about_memory_calculations = false;
492 
493  // Build the preconditioners and matrix vector products
494  for (unsigned i = 0; i < n_block_types; i++)
495  {
496  // See if the i-th subsidiary preconditioner the GMRES block
497  // preconditioner
498  if (dynamic_cast<GMRESBlockPreconditioner*>(
499  this->Subsidiary_preconditioner_pt[i]) != 0)
500  {
501  // Upcast the subsidiary preconditioner pointer to a GMRES block
502  // preconditioner pointer
503  GMRESBlockPreconditioner* gmres_block_prec_pt =
504  dynamic_cast<GMRESBlockPreconditioner*>(
505  this->Subsidiary_preconditioner_pt[i]);
506 
507  // Update the subsidiary preconditioner memory usage variable
508  memory_usage_for_subsidiary_preconditioner_in_bytes +=
509  gmres_block_prec_pt->get_memory_usage_in_bytes();
510 
511  // Add on the memory usage for the NS subsidiary block preconditioner
512  memory_usage_for_nssbp_preconditioner_in_bytes +=
513  gmres_block_prec_pt->navier_stokes_subsidiary_preconditioner_pt()
515  }
516  // This block is preconditioned by the SuperLU preconditioner
517  else if (dynamic_cast<SuperLUPreconditioner*>(
518  this->Subsidiary_preconditioner_pt[i]) != 0)
519  {
520  // Update the subsidiary preconditioner memory usage variable
521  memory_usage_for_subsidiary_preconditioner_in_bytes +=
522  dynamic_cast<SuperLUPreconditioner*>(
523  this->Subsidiary_preconditioner_pt[i])
524  ->get_total_memory_needed_for_superlu();
525  }
526  // Don't know what to do otherwise!
527  else
528  {
529  // Have we already complained once?
530  if (!have_issued_warning_about_memory_calculations)
531  {
532  // Remember that we've issued a warning now
533  have_issued_warning_about_memory_calculations = true;
534 
535  // Allocate storage for an output stream
536  std::ostringstream warning_message_stream;
537 
538  // Create a warning message
539  warning_message_stream
540  << "Can't compute the memory statistics for the " << i
541  << "-th diagonal block in the banded\nblock "
542  << "triangular preconditioner so I'm just going "
543  << "to skip it." << std::endl;
544 
545  // Give the user a warning
546  OomphLibWarning(warning_message_stream.str(),
547  OOMPH_CURRENT_FUNCTION,
548  OOMPH_EXCEPTION_LOCATION);
549  }
550  }
551  } // for (unsigned i=0;i<nblock_types;i++)
552 
553  // Create some space
554  oomph_info << std::endl;
555 
556  // If we've got a nonzero contribution from the NSSBP
557  if (memory_usage_for_nssbp_preconditioner_in_bytes > 0.0)
558  {
559  // Doc. the memory usage for the NSSBP
560  oomph_info << "Amount of memory used by Navier-Stokes subsidiary block "
561  << "preconditioner (MB): "
562  << memory_usage_for_nssbp_preconditioner_in_bytes / 1.0e+06
563  << std::endl;
564 
565  // Add in the NSSBP contribution
566  total_memory_usage_for_setup_phase +=
567  memory_usage_for_nssbp_preconditioner_in_bytes;
568  }
569 
570  // Add in the subsidiary preconditioners contribution
571  total_memory_usage_for_setup_phase +=
572  memory_usage_for_subsidiary_preconditioner_in_bytes;
573 
574  // Add in the banded block triangular preconditioner contribution
575  total_memory_usage_for_setup_phase += get_memory_usage_in_bytes();
576 
577  // Add in the global Jacobian contribution
578  total_memory_usage_for_setup_phase +=
579  memory_usage_for_storage_of_global_jacobian_in_bytes;
580 
581  // How much memory have we used in the subsidiary preconditioners?
582  oomph_info
583  << "Amount of memory used by the subsidiary preconditioners "
584  << "(MB): "
585  << memory_usage_for_subsidiary_preconditioner_in_bytes / 1.0e+06
586  << "\nAmount of memory used by banded block triangular "
587  << "preconditioner (MB): " << get_memory_usage_in_bytes() / 1.0e+06
588  << "\nAmount of memory used to store (global) Jacobian (MB): "
589  << memory_usage_for_storage_of_global_jacobian_in_bytes / 1.0e+06
590  << "\nTotal amount of memory being used after setup (MB): "
591  << total_memory_usage_for_setup_phase / 1.0e+06 << "\n"
592  << std::endl;
593  } // if (Compute_memory_statistics)
594  } // End of setup
595 
596  //=============================================================================
597  /// Preconditioner solve for the block triangular preconditioner
598  //=============================================================================
599  template<typename MATRIX>
601  const DoubleVector& r, DoubleVector& z)
602  {
603  // Cache number of block types
604  unsigned n_block = this->nblock_types();
605 
606  // The start index
607  int start;
608 
609  // The end index
610  int end;
611 
612  // The max. bandwidth of the block matrix
613  int bandwidth_limit;
614 
615  // The steps to take (=+1/-1) which is dependent on whether we're using
616  // the lower or upper triangular form of the preconditioner
617  int step;
618 
619  // If we're using this as an block upper triangular preconditioner
620  if (Upper_triangular)
621  {
622  start = n_block - 1;
623  end = -1;
624  step = -1;
625  }
626  else
627  {
628  start = 0;
629  end = n_block;
630  step = 1;
631  }
632 
633  // Storage for the iteration count. The entries will be updated as we loop
634  // over the blocks. Here -1 is used to indicate that a block was not solved
635  // by GMRES so we ignore it
636  Vector<int> iteration_count(n_block, -1);
637 
638  // Storage for the number of blocks solved with GMRES
639  unsigned n_block_solved_with_gmres = 0;
640 
641  // Vector of vectors for each section of residual vector
642  Vector<DoubleVector> block_r;
643 
644  // Rearrange the vector r into the vector of block vectors block_r
645  this->get_block_vectors(r, block_r);
646 
647  // Vector of vectors for the solution block vectors
648  Vector<DoubleVector> block_z(n_block);
649 
650  // Loop over the block rows
651  for (int i = start; i != end; i += step)
652  {
653  // If the i-th subsidiary preconditioner is a block preconditioner
654  if (dynamic_cast<BlockPreconditioner<CRDoubleMatrix>*>(
655  this->Subsidiary_preconditioner_pt[i]) != 0)
656  {
657  // This is pretty inefficient but there is no other way to do this with
658  // block sub preconditioners as far as I can tell because they demand
659  // to have the full r and z vectors...
660  DoubleVector block_z_with_size_of_full_z(r.distribution_pt());
661  DoubleVector r_updated(r.distribution_pt());
662 
663  // Construct the new r vector (with the update given by back subs
664  // below).
665  this->return_block_vectors(block_r, r_updated);
666 
667  // Solve (blocking is handled inside the block preconditioner).
668  this->Subsidiary_preconditioner_pt[i]->preconditioner_solve(
669  r_updated, block_z_with_size_of_full_z);
670 
671  // Extract this block's z vector because we need it for the next step
672  // (and throw away block_z_with_size_of_full_z).
673  this->get_block_vector(i, block_z_with_size_of_full_z, block_z[i]);
674  }
675  // If the subsidiary preconditioner is just a regular preconditioner
676  else
677  {
678  // Solve on the block
679  this->Subsidiary_preconditioner_pt[i]->preconditioner_solve(block_r[i],
680  block_z[i]);
681  }
682 
683  // See if the i-th subsidiary preconditioner the GMRES block
684  // preconditioner
685  if (dynamic_cast<GMRESBlockPreconditioner*>(
686  this->Subsidiary_preconditioner_pt[i]) != 0)
687  {
688  // Update the iteration count
689  iteration_count[i] = dynamic_cast<GMRESBlockPreconditioner*>(
690  this->Subsidiary_preconditioner_pt[i])
691  ->iterations();
692 
693  // Increment the counter
694  n_block_solved_with_gmres++;
695  }
696 
697  // If the block bandwidth has been provided
698  if (Block_bandwidth >= 0)
699  {
700  // If we're using this as an block upper triangular preconditioner
701  if (Upper_triangular)
702  {
703  bandwidth_limit = std::max(end - i, step + step * Block_bandwidth);
704  }
705  else
706  {
707  bandwidth_limit = std::min(end - i, step + step * Block_bandwidth);
708  }
709  }
710  // Default case; loop over all the block rows
711  else
712  {
713  bandwidth_limit = end - i;
714  }
715 
716  // Substitute (over all the rows)
717  for (int j = i + step; j != i + bandwidth_limit; j += step)
718  {
719  // Allocate space for the matrix-vector product (MVP)
720  DoubleVector temp;
721 
722  // Calculate the MVP
723  Off_diagonal_matrix_vector_products(j, i)->multiply(block_z[i], temp);
724 
725  // Now update the RHS vector
726  block_r[j] -= temp;
727  }
728  } // for (int i=start;i!=end;i+=step)
729 
730  // Copy the solution from the block vector block_z back into z
731  this->return_block_vectors(block_z, z);
732 
733  // Only compute the iteration count statistics if we have some data
734  if (n_block_solved_with_gmres > 0)
735  {
736  // Storage for the average iteration count
737  double n_iter_mean = 0.0;
738 
739  // Storage for the variance of the iteration count
740  double n_iter_var = 0.0;
741 
742  // Loop over the entries of the iteration count vector
743  for (unsigned i = 0; i < n_block; i++)
744  {
745  // If we used GMRES on this block
746  if (dynamic_cast<GMRESBlockPreconditioner*>(
747  this->Subsidiary_preconditioner_pt[i]) != 0)
748  {
749  // Sanity check: make sure there's a non-negative iteration count
750  if (iteration_count[i] < 0)
751  {
752  // Create an output stream
753  std::ostringstream error_message_stream;
754 
755  // Create an error message
756  error_message_stream
757  << "Iteration count should be non-negative but "
758  << "you have an iteration\ncount of " << iteration_count[i] << "!"
759  << std::endl;
760 
761  // Throw an error
762  throw OomphLibError(error_message_stream.str(),
763  OOMPH_CURRENT_FUNCTION,
764  OOMPH_EXCEPTION_LOCATION);
765  }
766  } // if (dynamic_cast<GMRESBlockPreconditioner*>...
767  } // for (unsigned i=0;i<n_block;i++)
768 
769  // Loop over the entries of the iteration count vector
770  for (unsigned i = 0; i < n_block; i++)
771  {
772  // If we used GMRES on this block
773  if (dynamic_cast<GMRESBlockPreconditioner*>(
774  this->Subsidiary_preconditioner_pt[i]) != 0)
775  {
776  // Update the mean
777  n_iter_mean +=
778  (double(iteration_count[i]) / double(n_block_solved_with_gmres));
779  } // if (dynamic_cast<GMRESBlockPreconditioner*>...
780  } // for (unsigned i=0;i<n_block;i++)
781 
782  // Loop over the entries of the iteration count vector (again)
783  // NOTE: We don't need to do the error checks again, we did them on the
784  // previous run through
785  for (unsigned i = 0; i < n_block; i++)
786  {
787  // If we used GMRES on this block
788  if (dynamic_cast<GMRESBlockPreconditioner*>(
789  this->Subsidiary_preconditioner_pt[i]) != 0)
790  {
791  // Update the variance
792  n_iter_var +=
793  (std::pow(double(iteration_count[i]) - n_iter_mean, 2.0) /
794  double(n_block_solved_with_gmres));
795  } // if (dynamic_cast<GMRESBlockPreconditioner*>...
796  } // for (unsigned i=0;i<n_block;i++)
797 
798  // Doc. the statistics
799  oomph_info << "\nNumber of subsidiary blocks solved with GMRES: "
800  << n_block_solved_with_gmres
801  << "\nAverage subsidiary preconditioner iteration count: "
802  << n_iter_mean
803  << "\nStandard deviation of subsidiary preconditioner "
804  << "iteration count: " << std::sqrt(n_iter_var) << std::endl;
805  } // if (n_block_solved_with_gmres>0)
806  } // End of preconditioner_solve
807 
808  // Ensure build of required objects (BUT only for CRDoubleMatrix objects)
811 } // End of namespace oomph
cstr elem_len * i
Definition: cfortran.h:603
General purpose block triangular preconditioner. By default this operates as an upper triangular prec...
void preconditioner_solve(const DoubleVector &r, DoubleVector &z)
Apply preconditioner to r.
A class for compressed row matrices. This is a distributable object.
Definition: matrices.h:888
unsigned long nnz() const
Return the number of nonzero entries (the local nnz)
Definition: matrices.h:1096
unsigned long nrow() const
Return the number of rows of the matrix.
Definition: matrices.h:1002
LinearAlgebraDistribution * distribution_pt() const
access to the LinearAlgebraDistribution
A vector in the mathematical sense, initially developed for linear algebra type applications....
Definition: double_vector.h:58
General purpose block tridiagonal preconditioner. By default SuperLUPreconditioner (or SuperLUDistPre...
void preconditioner_solve(const DoubleVector &r, DoubleVector &z)
Apply preconditioner to r.
The block preconditioner form of GMRES. This version extracts the blocks from the global systems and ...
SpaceTimeNavierStokesSubsidiaryPreconditioner * navier_stokes_subsidiary_preconditioner_pt() const
Handle to the Navier-Stokes subsidiary block preconditioner DRAIG: Make sure the desired const-ness i...
Matrix vector product helper class - primarily a wrapper to Trilinos's Epetra matrix vector product m...
std::ostream *& stream_pt()
Access function for the stream pointer.
An OomphLibError object which should be thrown when an run-time error is encountered....
An OomphLibWarning object which should be created as a temporary object to issue a warning....
An interface to allow SuperLU to be used as an (exact) Preconditioner.
VectorMatrix is a generalised, STL-map-based, matrix based on a Vector of Vectors.
Definition: vector_matrix.h:79
A slight extension to the standard template vector class so that we can include "graceful" array rang...
Definition: Vector.h:58
void start(const unsigned &i)
(Re-)start i-th timer
void split(const DoubleVector &in_vector, Vector< DoubleVector * > &out_vector_pt)
Split a DoubleVector into the out DoubleVectors. Let vec_A be the in Vector, and let vec_B and vec_C ...
void concatenate(const Vector< DoubleVector * > &in_vector_pt, DoubleVector &out_vector)
Concatenate DoubleVectors. Takes a Vector of DoubleVectors. If the out vector is built,...
void clean_up_memory()
Clean up function that deletes anything dynamically allocated in this namespace.
double timer()
returns the time in seconds after some point in past
//////////////////////////////////////////////////////////////////// ////////////////////////////////...
Nullstream oomph_nullstream
///////////////////////////////////////////////////////////////////////// ///////////////////////////...
OomphInfo oomph_info
Single (global) instantiation of the OomphInfo object – this is used throughout the library as a "rep...
void get_memory_usage_in_bytes(double *lu_factor_memory, double *total_memory)
Definition: superlu.c:85