quad_from_triangle_mesh.template.h
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26 // Driver for 2D moving block
27 #ifndef OOMPH_QUAD_FROM_TRIANGLE_MESH_TEMPLATE_HEADER
28 #define OOMPH_QUAD_FROM_TRIANGLE_MESH_TEMPLATE_HEADER
29 
30 
31 #ifdef OOMPH_HAS_MPI
32 // MPI header
33 #include "mpi.h"
34 #endif
35 
36 // Standards
37 #include <float.h>
38 #include <iostream>
39 #include <fstream>
40 #include <string.h>
41 #include <iomanip>
42 
43 #ifdef OOMPH_HAS_FPUCONTROLH
44 #include <fpu_control.h>
45 #endif
46 
47 // The mesh
48 #include "../generic/problem.h"
49 #include "../generic/quad_mesh.h"
50 #include "triangle_mesh.template.h"
51 #include "../generic/triangle_scaffold_mesh.h"
52 #include "../generic/unstructured_two_d_mesh_geometry_base.h"
53 #include "../generic/refineable_quad_mesh.h"
54 #include "../generic/Qelements.h"
55 
56 
57 /// /////////////////////////////////////////////////////////////////
58 /// /////////////////////////////////////////////////////////////////
59 /// /////////////////////////////////////////////////////////////////
60 
61 
62 namespace oomph
63 {
64  //============start_of_quad_triangle_class==============================
65  /// Quad mesh built on top of triangle scaffold mesh coming
66  /// from the triangle mesh generator Triangle.
67  /// http://www.cs.cmu.edu/~quake/triangle.html
68  //======================================================================
69  template<class ELEMENT>
70  class QuadFromTriangleMesh : public virtual UnstructuredTwoDMeshGeometryBase,
71  public virtual QuadMeshBase
72  {
73  public:
74  /// Empty constructor
76  {
77 #ifdef OOMPH_HAS_TRIANGLE_LIB
78  // By default allow the automatic creation of vertices along the
79  // boundaries by Triangle
80  this->Allow_automatic_creation_of_vertices_on_boundaries = true;
81 #endif
82 
83  // Mesh can only be built with 2D Qelements.
84  MeshChecker::assert_geometric_element<QElementGeometricBase, ELEMENT>(2);
85  }
86 
87  /// Constructor with the input files
89  const std::string& node_file_name,
90  const std::string& element_file_name,
91  const std::string& poly_file_name,
92  TimeStepper* time_stepper_pt = &Mesh::Default_TimeStepper,
93  const bool& use_attributes = false,
94  const bool& allow_automatic_creation_of_vertices_on_boundaries = true)
95  {
96  // Mesh can only be built with 2D Qelements.
97  MeshChecker::assert_geometric_element<QElementGeometricBase, ELEMENT>(2);
98 
99  // Initialize the value for allowing creation of points on boundaries
100  this->Allow_automatic_creation_of_vertices_on_boundaries =
101  allow_automatic_creation_of_vertices_on_boundaries;
102 
103  // Store Timestepper used to build elements
104  this->Time_stepper_pt = time_stepper_pt;
105 
106  // Store the attributes
107  this->Use_attributes = use_attributes;
108 
109  // Build scaffold
110  TriangleScaffoldMesh* tmp_mesh_pt = new TriangleScaffoldMesh(
111  node_file_name, element_file_name, poly_file_name);
112 
113  // Convert mesh from scaffold to actual mesh
114  this->build_from_scaffold(tmp_mesh_pt, time_stepper_pt, use_attributes);
115 
116  // Kill the scaffold
117  delete tmp_mesh_pt;
118  tmp_mesh_pt = 0;
119 
120  // Setup boundary coordinates for boundaries
121  unsigned nbound = nboundary();
122  for (unsigned ibound = 0; ibound < nbound; ibound++)
123  {
124  this->template setup_boundary_coordinates<ELEMENT>(ibound);
125  }
126  }
127 
128 #ifdef OOMPH_HAS_TRIANGLE_LIB
129 
130  /// Build mesh, based on the specifications on
131  /// TriangleMeshParameters. All the actual work is done
132  /// in UnstructuredTwoDMeshGeometryBase
134  TriangleMeshParameters& triangle_mesh_parameters,
135  TimeStepper* time_stepper_pt = &Mesh::Default_TimeStepper)
136  {
137  // Mesh can only be built with 2D Qelements.
138  MeshChecker::assert_geometric_element<QElementGeometricBase, ELEMENT>(2);
139 
140  // Initialize the value for allowing creation of points on boundaries
141  this->Allow_automatic_creation_of_vertices_on_boundaries =
142  triangle_mesh_parameters
144 
145  // Store Timestepper used to build elements
146  this->Time_stepper_pt = time_stepper_pt;
147 
148  // ********************************************************************
149  // First part - Get polylines representations
150  // ********************************************************************
151 
152  // Create the polyline representation of all the boundaries and
153  // then create the mesh by calling to "generic_constructor()"
154 
155  // Initialise highest boundary id
156  unsigned max_boundary_id = 0;
157 
158  // *****************************************************************
159  // Part 1.1 - Outer boundary
160  // *****************************************************************
161  // Get the representation of the outer boundaries from the
162  // TriangleMeshParameters object
163  Vector<TriangleMeshClosedCurve*> outer_boundary_pt =
164  triangle_mesh_parameters.outer_boundary_pt();
165 
166 #ifdef PARANOID
167 
168  // Verify that the outer_boundary_object_pt has been set
169  if (outer_boundary_pt.size() == 0)
170  {
171  std::stringstream error_message;
172  error_message
173  << "There are no outer boundaries defined.\n"
174  << "Verify that you have specified the outer boundaries in the\n"
175  << "Triangle_mesh_parameter object\n\n";
176  throw OomphLibError(error_message.str(),
177  OOMPH_CURRENT_FUNCTION,
178  OOMPH_EXCEPTION_LOCATION);
179  } // if (outer_boundary_pt!=0)
180 
181 #endif
182 
183  // Find the number of outer closed curves
184  unsigned n_outer_boundaries = outer_boundary_pt.size();
185 
186  // Create the storage for the polygons that define the outer boundaries
187  Vector<TriangleMeshPolygon*> outer_boundary_polygon_pt(
188  n_outer_boundaries);
189 
190  // Loop over the number of outer boundaries
191  for (unsigned i = 0; i < n_outer_boundaries; ++i)
192  {
193  // Get the polygon representation and compute the max boundary_id on
194  // each outer polygon. Does nothing (i.e. just returns a pointer to
195  // the outer boundary that was input) if the outer boundary is
196  // already a polygon
197  outer_boundary_polygon_pt[i] = this->closed_curve_to_polygon_helper(
198  outer_boundary_pt[i], max_boundary_id);
199  }
200 
201  // *****************************************************************
202  // Part 1.2 - Internal closed boundaries (possible holes)
203  // *****************************************************************
204  // Get the representation of the internal closed boundaries from the
205  // TriangleMeshParameters object
206  Vector<TriangleMeshClosedCurve*> internal_closed_curve_pt =
207  triangle_mesh_parameters.internal_closed_curve_pt();
208 
209  // Find the number of internal closed curves
210  unsigned n_internal_closed_curves = internal_closed_curve_pt.size();
211 
212  // Create the storage for the polygons that define the internal closed
213  // boundaries (again nothing happens (as above) if an internal closed
214  // curve is already a polygon)
215  Vector<TriangleMeshPolygon*> internal_polygon_pt(
216  n_internal_closed_curves);
217 
218  // Loop over the number of internal closed curves
219  for (unsigned i = 0; i < n_internal_closed_curves; ++i)
220  {
221  // Get the polygon representation and compute the max boundary_id on
222  // each internal polygon
223  internal_polygon_pt[i] = this->closed_curve_to_polygon_helper(
224  internal_closed_curve_pt[i], max_boundary_id);
225  }
226 
227  // *****************************************************************
228  // Part 1.3 - Internal open boundaries
229  // *****************************************************************
230  // Get the representation of open boundaries from the
231  // TriangleMeshParameteres object
232  Vector<TriangleMeshOpenCurve*> internal_open_curve_pt =
233  triangle_mesh_parameters.internal_open_curves_pt();
234 
235  // Find the number of internal open curves
236  unsigned n_internal_open_curves = internal_open_curve_pt.size();
237 
238  // Create the storage for the polylines that define the open boundaries
239  Vector<TriangleMeshOpenCurve*> internal_open_curve_poly_pt(
240  n_internal_open_curves);
241 
242  // Loop over the number of internal open curves
243  for (unsigned i = 0; i < n_internal_open_curves; i++)
244  {
245  // Get the open polyline representation and compute the max boundary_id
246  // on each open polyline (again, nothing happens if there are curve
247  // sections on the current internal open curve)
248  internal_open_curve_poly_pt[i] =
249  this->create_open_curve_with_polyline_helper(
250  internal_open_curve_pt[i], max_boundary_id);
251  }
252 
253  // ********************************************************************
254  // Second part - Get associated geom objects and coordinate limits
255  // ********************************************************************
256 
257  // ***************************************************************
258  // Part 2.1 Outer boundary
259  // ***************************************************************
260  for (unsigned i = 0; i < n_outer_boundaries; i++)
261  {
262  this->set_geom_objects_and_coordinate_limits_for_close_curve(
263  outer_boundary_pt[i]);
264  }
265 
266  // ***************************************************************
267  // Part 2.2 - Internal closed boundaries (possible holes)
268  // ***************************************************************
269  for (unsigned i = 0; i < n_internal_closed_curves; i++)
270  {
271  this->set_geom_objects_and_coordinate_limits_for_close_curve(
272  internal_closed_curve_pt[i]);
273  }
274 
275  // ********************************************************************
276  // Part 2.3 - Internal open boundaries
277  // ********************************************************************
278  for (unsigned i = 0; i < n_internal_open_curves; i++)
279  {
280  this->set_geom_objects_and_coordinate_limits_for_open_curve(
281  internal_open_curve_pt[i]);
282  }
283 
284  // ********************************************************************
285  // Third part - Creates the TriangulateIO object by calling the
286  // "generic_constructor()" function
287  // ********************************************************************
288  // Get all the other parameters from the TriangleMeshParameters object
289  // The maximum element area
290  const double element_area = triangle_mesh_parameters.element_area();
291 
292  // The holes coordinates
293  Vector<Vector<double>> extra_holes_coordinates =
294  triangle_mesh_parameters.extra_holes_coordinates();
295 
296  // The regions coordinates
297  std::map<unsigned, Vector<double>> regions =
298  triangle_mesh_parameters.regions_coordinates();
299 
300  // If we use regions then we use attributes
301  const bool use_attributes = triangle_mesh_parameters.is_use_attributes();
302 
303  const bool refine_boundary =
304  triangle_mesh_parameters.is_boundary_refinement_allowed();
305 
306  const bool refine_internal_boundary =
307  triangle_mesh_parameters.is_internal_boundary_refinement_allowed();
308 
309  if (!refine_internal_boundary && refine_boundary)
310  {
311  std::ostringstream error_stream;
312  error_stream
313  << "You have specified that Triangle may refine the outer boundary, "
314  "but\n"
315  << "not internal boundaries. Triangle does not support this "
316  "combination.\n"
317  << "If you do not want Triangle to refine internal boundaries, it "
318  "can't\n"
319  << "refine outer boundaries either!\n"
320  << "Please either disable all boundary refinement\n"
321  << "(call TriangleMeshParameters::disable_boundary_refinement()\n"
322  << "or enable internal boundary refinement (the default)\n";
323 
324  throw OomphLibError(error_stream.str().c_str(),
325  OOMPH_CURRENT_FUNCTION,
326  OOMPH_EXCEPTION_LOCATION);
327  }
328 
329  this->generic_constructor(
330  outer_boundary_polygon_pt,
331  internal_polygon_pt,
332  internal_open_curve_poly_pt,
333  element_area,
334  extra_holes_coordinates,
335  regions,
336  triangle_mesh_parameters.target_area_for_region(),
337  time_stepper_pt,
338  use_attributes,
339  refine_boundary,
340  refine_internal_boundary);
341 
342 #ifdef OOMPH_HAS_MPI
343 
344  // Before calling setup boundary coordinates check if the mesh is
345  // marked as distrbuted
346  if (triangle_mesh_parameters.is_mesh_distributed())
347  {
348  // Set the mesh as distributed by passing the communicator
349  this->set_communicator_pt(triangle_mesh_parameters.communicator_pt());
350  }
351 
352 #endif
353 
354  // Setup boundary coordinates for boundaries
355  unsigned nb = nboundary();
356  for (unsigned b = 0; b < nb; b++)
357  {
358  this->template setup_boundary_coordinates<ELEMENT>(b);
359  }
360 
361  // Snap it!
362  this->snap_nodes_onto_geometric_objects();
363  }
364 
365  /// A general-purpose construction function that builds the
366  /// mesh once the different specific constructors have assembled the
367  /// appropriate information.
369  Vector<TriangleMeshPolygon*>& outer_boundary_pt,
370  Vector<TriangleMeshPolygon*>& internal_polygon_pt,
371  Vector<TriangleMeshOpenCurve*>& open_polylines_pt,
372  const double& element_area,
373  Vector<Vector<double>>& extra_holes_coordinates,
374  std::map<unsigned, Vector<double>>& regions_coordinates,
375  std::map<unsigned, double>& regions_areas,
376  TimeStepper* time_stepper_pt,
377  const bool& use_attributes,
378  const bool& refine_boundary,
379  const bool& refine_internal_boundary)
380  {
381 #ifdef PARANOID
382 
383  if (element_area < 10e-14)
384  {
385  std::ostringstream warning_message;
386  warning_message
387  << "The current elements area was stated to (" << element_area
388  << ").\nThe current precision to generate the input to triangle "
389  << "is fixed to 14 digits\n\n";
390  OomphLibWarning(warning_message.str(),
391  OOMPH_CURRENT_FUNCTION,
392  OOMPH_EXCEPTION_LOCATION);
393  }
394 
395 #endif
396 
397  // Store the attribute flag
398  this->Use_attributes = use_attributes;
399 
400  // Store the timestepper used to build elements
401  this->Time_stepper_pt = time_stepper_pt;
402 
403  // Store outer polygon
404  this->Outer_boundary_pt = outer_boundary_pt;
405 
406  // Store internal polygons by copy constructor
407  this->Internal_polygon_pt = internal_polygon_pt;
408 
409  // Store internal polylines by copy constructor
410  this->Internal_open_curve_pt = open_polylines_pt;
411 
412  // Store the extra holes coordinates
413  this->Extra_holes_coordinates = extra_holes_coordinates;
414 
415  // Store the extra regions coordinates
416  this->Regions_coordinates = regions_coordinates;
417 
418  // Create the data structures required to call the triangulate function
419  TriangulateIO triangulate_io;
420  TriangulateIO triangulate_out;
421 
422  // Initialize TriangulateIO structure
423  TriangleHelper::initialise_triangulateio(triangulate_io);
424 
425  // Convert TriangleMeshPolyLine and TriangleMeshClosedCurvePolyLine
426  // to a triangulateio object
427  UnstructuredTwoDMeshGeometryBase::build_triangulateio(
428  outer_boundary_pt,
429  internal_polygon_pt,
430  open_polylines_pt,
431  extra_holes_coordinates,
432  regions_coordinates,
433  regions_areas,
434  triangulate_io);
435 
436  // Initialize TriangulateIO structure
437  TriangleHelper::initialise_triangulateio(triangulate_out);
438 
439  // Input string for triangle
440  std::stringstream input_string_stream;
441  input_string_stream.precision(14);
442  input_string_stream.setf(std::ios_base::fixed, std::ios_base::floatfield);
443 
444  // MH: Used to be:
445  // input_string_stream<<"-pA -a" << element_area << " -q30" << std::fixed;
446  // The repeated -a allows the specification of areas for different
447  // regions (if any)
448  input_string_stream << "-pA -a -a" << element_area << " -q30"
449  << std::fixed;
450 
451  // Verify if creation of new points on boundaries is allowed
452  if (!this->is_automatic_creation_of_vertices_on_boundaries_allowed())
453  {
454  input_string_stream << " -YY";
455  }
456 
457  // Suppress insertion of additional points on outer boundary
458  if (refine_boundary == false)
459  {
460  input_string_stream << "-Y";
461 
462  // Add the extra flag to suppress additional points on interior segments
463  if (refine_internal_boundary == false)
464  {
465  input_string_stream << "Y";
466  }
467  }
468 
469  // Convert the Input string in *char required by the triangulate function
470  char triswitches[100];
471  sprintf(triswitches, "%s", input_string_stream.str().c_str());
472 
473  // Build the mesh using triangulate function
474  triangulate(triswitches, &triangulate_io, &triangulate_out, 0);
475 
476 #ifdef OOMPH_HAS_FPUCONTROLH
477  // Reset flags that are tweaked by triangle; can cause nasty crashes
478  fpu_control_t cw = (_FPU_DEFAULT & ~_FPU_EXTENDED) | _FPU_DOUBLE;
479  _FPU_SETCW(cw);
480 #endif
481 
482  // Build scaffold
483  TriangleScaffoldMesh* tmp_mesh_pt =
484  new TriangleScaffoldMesh(triangulate_out);
485 
486  // If we have filled holes then we must use the attributes
487  if (!regions_coordinates.empty())
488  {
489  // Convert mesh from scaffold to actual mesh
490  build_from_scaffold(tmp_mesh_pt, time_stepper_pt, true);
491 
492  // Record the attribute flag
493  this->Use_attributes = true;
494  }
495  // Otherwise use what was asked
496  else
497  {
498  // Convert mesh from scaffold to actual mesh
499  build_from_scaffold(tmp_mesh_pt, time_stepper_pt, use_attributes);
500  }
501 
502  // Kill the scaffold
503  delete tmp_mesh_pt;
504  tmp_mesh_pt = 0;
505 
506  // Cleanup but leave hole and regions alone since it's still used
507  bool clear_hole_data = false;
508  TriangleHelper::clear_triangulateio(triangulate_io, clear_hole_data);
509  TriangleHelper::clear_triangulateio(triangulate_out, clear_hole_data);
510  }
511 
512 #endif // OOMPH_HAS_TRIANGLE_LIB
513 
514  /// Broken copy constructor
516 
517  /// Broken assignment operator
518  void operator=(const QuadFromTriangleMesh&) = delete;
519 
520  /// Empty destructor
522  {
523 #ifdef OOMPH_HAS_TRIANGLE_LIB
524 
525  std::set<TriangleMeshCurveSection*>::iterator it_polyline;
526  for (it_polyline = Free_curve_section_pt.begin();
527  it_polyline != Free_curve_section_pt.end();
528  it_polyline++)
529  {
530  delete (*it_polyline);
531  }
532 
533  std::set<TriangleMeshPolygon*>::iterator it_polygon;
534  for (it_polygon = Free_polygon_pt.begin();
535  it_polygon != Free_polygon_pt.end();
536  it_polygon++)
537  {
538  delete (*it_polygon);
539  }
540 
541  std::set<TriangleMeshOpenCurve*>::iterator it_open_polyline;
542  for (it_open_polyline = Free_open_curve_pt.begin();
543  it_open_polyline != Free_open_curve_pt.end();
544  it_open_polyline++)
545  {
546  delete (*it_open_polyline);
547  }
548 
549 #endif
550  }
551 
552  /// Build the quad mesh from the given scaffold mesh
553  void build_from_scaffold(TriangleScaffoldMesh* tmp_mesh_pt,
554  TimeStepper* time_stepper_pt,
555  const bool& use_attributes);
556 
557  /// Timestepper used to build elements
558  TimeStepper* Time_stepper_pt;
559 
560  /// Boolean flag to indicate whether to use attributes or not (required
561  /// for multidomain meshes)
563  };
564 
565 
566  /// /////////////////////////////////////////////////////////////////
567  /// /////////////////////////////////////////////////////////////////
568  /// /////////////////////////////////////////////////////////////////
569 
570 
571  //=========================================================================
572  /// Unstructured refineable QuadFromTriangleMesh
573  //=========================================================================
574  template<class ELEMENT>
576  : public virtual QuadFromTriangleMesh<ELEMENT>,
577  public virtual RefineableQuadMesh<ELEMENT>
578  {
579  public:
580 #ifdef OOMPH_HAS_TRIANGLE_LIB
581 
582  /// Build mesh, based on the specifications on
583  /// TriangleMeshParameters
585  TriangleMeshParameters& triangle_mesh_parameters,
586  TimeStepper* time_stepper_pt = &Mesh::Default_TimeStepper)
587  : QuadFromTriangleMesh<ELEMENT>(triangle_mesh_parameters, time_stepper_pt)
588  {
589  this->setup_quadtree_forest();
590  }
591 
592 #endif
593 
594  /// Refine mesh uniformly
595  virtual void refine_uniformly()
596  {
597  DocInfo doc_info;
598  doc_info.directory() = "";
599  doc_info.disable_doc();
600  refine_uniformly(doc_info);
601  }
602 
603  /// Refine mesh uniformly and doc process
604  void refine_uniformly(DocInfo& doc_info)
605  {
606  // Find the number of elements in the mesh
607  unsigned nelem = this->nelement();
608 
609  // Set the element error to something big
610  Vector<double> elem_error(nelem, DBL_MAX);
611 
612  // Refine everything
613  adapt(elem_error);
614  }
615 
616  /// Overload the adapt function (to ensure nodes are snapped to the
617  /// boundary)
618  void adapt(const Vector<double>& elem_error);
619 
620  /// Build mesh, based on the polyfiles
622  const std::string& node_file_name,
623  const std::string& element_file_name,
624  const std::string& poly_file_name,
625  TimeStepper* time_stepper_pt = &Mesh::Default_TimeStepper)
626  : QuadFromTriangleMesh<ELEMENT>(
627  node_file_name, element_file_name, poly_file_name, time_stepper_pt)
628  {
629  this->setup_quadtree_forest();
630  }
631 
632  /// Empty Destructor
634  };
635 
636 
637  /// /////////////////////////////////////////////////////////////////
638  /// /////////////////////////////////////////////////////////////////
639  /// /////////////////////////////////////////////////////////////////
640 
641 
642  //=========================================================================
643  /// Unstructured QuadFromTriangleMesh upgraded to solid mesh
644  //=========================================================================
645  template<class ELEMENT>
647  : public virtual QuadFromTriangleMesh<ELEMENT>,
648  public virtual SolidMesh
649  {
650  public:
652  const std::string& node_file_name,
653  const std::string& element_file_name,
654  const std::string& poly_file_name,
655  TimeStepper* time_stepper_pt = &Mesh::Default_TimeStepper,
656  const bool& use_attributes = false)
657  : QuadFromTriangleMesh<ELEMENT>(node_file_name,
658  element_file_name,
659  poly_file_name,
660  time_stepper_pt,
661  use_attributes)
662  {
663  // Assign the Lagrangian coordinates
664  set_lagrangian_nodal_coordinates();
665  }
666 
667 #ifdef OOMPH_HAS_TRIANGLE_LIB
668 
669  /// Build mesh, based on closed curve that specifies
670  /// the outer boundary of the domain and any number of internal
671  /// clsed curves. Specify target area for uniform element size.
673  TriangleMeshParameters& triangle_mesh_parameters,
674  TimeStepper* time_stepper_pt = &Mesh::Default_TimeStepper)
675  : QuadFromTriangleMesh<ELEMENT>(triangle_mesh_parameters, time_stepper_pt)
676  {
677  // Assign the Lagrangian coordinates
678  set_lagrangian_nodal_coordinates();
679  }
680 
681 #endif
682 
683  /// Empty Destructor
685  };
686 
687 
688  /// /////////////////////////////////////////////////////////////////////
689  /// /////////////////////////////////////////////////////////////////////
690  /// /////////////////////////////////////////////////////////////////////
691 
692 
693  //=========================================================================
694  /// Unstructured refineable QuadFromTriangleMesh upgraded to solid mesh
695  //=========================================================================
696  template<class ELEMENT>
699  public virtual SolidMesh
700  {
701  public:
702  /// Build mesh from specified triangulation and associated
703  /// target areas for elements in it.
705  const std::string& node_file_name,
706  const std::string& element_file_name,
707  const std::string& poly_file_name,
708  TimeStepper* time_stepper_pt = &Mesh::Default_TimeStepper,
709  const bool& use_attributes = false)
710  : RefineableQuadFromTriangleMesh<ELEMENT>(node_file_name,
711  element_file_name,
712  poly_file_name,
713  time_stepper_pt,
714  use_attributes)
715  {
716  // Assign the Lagrangian coordinates
717  set_lagrangian_nodal_coordinates();
718  }
719 
720 #ifdef OOMPH_HAS_TRIANGLE_LIB
721 
722  /// Build mesh, based on the specifications on
723  /// TriangleMeshParameter
725  TriangleMeshParameters& triangle_mesh_parameters,
726  TimeStepper* time_stepper_pt = &Mesh::Default_TimeStepper)
727  : QuadFromTriangleMesh<ELEMENT>(triangle_mesh_parameters,
728  time_stepper_pt),
729  RefineableQuadFromTriangleMesh<ELEMENT>(triangle_mesh_parameters,
730  time_stepper_pt)
731  {
732  // Assign the Lagrangian coordinates
733  set_lagrangian_nodal_coordinates();
734  }
735 
736 #endif
737 
738  /// Empty Destructor
740  };
741 
742 
743 } // namespace oomph
744 
745 
746 #endif // OOMPH_QUAD_FROM_TRIANGLE_MESH_HEADER
Quad mesh built on top of triangle scaffold mesh coming from the triangle mesh generator Triangle....
void generic_constructor(Vector< TriangleMeshPolygon * > &outer_boundary_pt, Vector< TriangleMeshPolygon * > &internal_polygon_pt, Vector< TriangleMeshOpenCurve * > &open_polylines_pt, const double &element_area, Vector< Vector< double >> &extra_holes_coordinates, std::map< unsigned, Vector< double >> &regions_coordinates, std::map< unsigned, double > &regions_areas, TimeStepper *time_stepper_pt, const bool &use_attributes, const bool &refine_boundary, const bool &refine_internal_boundary)
A general-purpose construction function that builds the mesh once the different specific constructors...
TimeStepper * Time_stepper_pt
Timestepper used to build elements.
QuadFromTriangleMesh(TriangleMeshParameters &triangle_mesh_parameters, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)
Build mesh, based on the specifications on TriangleMeshParameters. All the actual work is done in Uns...
void operator=(const QuadFromTriangleMesh &)=delete
Broken assignment operator.
QuadFromTriangleMesh(const std::string &node_file_name, const std::string &element_file_name, const std::string &poly_file_name, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper, const bool &use_attributes=false, const bool &allow_automatic_creation_of_vertices_on_boundaries=true)
Constructor with the input files.
bool Use_attributes
Boolean flag to indicate whether to use attributes or not (required for multidomain meshes)
void build_from_scaffold(TriangleScaffoldMesh *tmp_mesh_pt, TimeStepper *time_stepper_pt, const bool &use_attributes)
Build the quad mesh from the given scaffold mesh.
QuadFromTriangleMesh(const QuadFromTriangleMesh &dummy)=delete
Broken copy constructor.
///////////////////////////////////////////////////////////////// ///////////////////////////////////...
virtual void refine_uniformly()
Refine mesh uniformly.
RefineableQuadFromTriangleMesh(TriangleMeshParameters &triangle_mesh_parameters, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)
Build mesh, based on the specifications on TriangleMeshParameters.
RefineableQuadFromTriangleMesh(const std::string &node_file_name, const std::string &element_file_name, const std::string &poly_file_name, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)
Build mesh, based on the polyfiles.
void refine_uniformly(DocInfo &doc_info)
Refine mesh uniformly and doc process.
///////////////////////////////////////////////////////////////////// ///////////////////////////////...
RefineableSolidQuadFromTriangleMesh(TriangleMeshParameters &triangle_mesh_parameters, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)
Build mesh, based on the specifications on TriangleMeshParameter.
RefineableSolidQuadFromTriangleMesh(const std::string &node_file_name, const std::string &element_file_name, const std::string &poly_file_name, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper, const bool &use_attributes=false)
Build mesh from specified triangulation and associated target areas for elements in it.
///////////////////////////////////////////////////////////////// ///////////////////////////////////...
SolidQuadFromTriangleMesh(TriangleMeshParameters &triangle_mesh_parameters, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper)
Build mesh, based on closed curve that specifies the outer boundary of the domain and any number of i...
SolidQuadFromTriangleMesh(const std::string &node_file_name, const std::string &element_file_name, const std::string &poly_file_name, TimeStepper *time_stepper_pt=&Mesh::Default_TimeStepper, const bool &use_attributes=false)
///////////////////////////////////////////////////////////////////// ///////////////////////////////...
Vector< TriangleMeshClosedCurve * > internal_closed_curve_pt() const
Helper function for getting the internal closed boundaries.
bool is_automatic_creation_of_vertices_on_boundaries_allowed()
Returns the status of the variable Allow_automatic_creation_of_vertices_on_boundaries.
Vector< Vector< double > > extra_holes_coordinates() const
Helper function for getting the extra holes.
std::map< unsigned, double > & target_area_for_region()
Helper function for getting access to the region's target areas.
bool is_mesh_distributed() const
Boolean to indicate if Mesh has been distributed.
bool is_use_attributes() const
Helper function for getting the status of use_attributes variable.
Vector< TriangleMeshClosedCurve * > outer_boundary_pt() const
Helper function for getting the outer boundary.
OomphCommunicator * communicator_pt() const
Read-only access fct to communicator (Null if mesh is not distributed)
double element_area() const
Helper function for getting the element area.
Vector< TriangleMeshOpenCurve * > internal_open_curves_pt() const
Helper function for getting the internal open boundaries.
std::map< unsigned, Vector< double > > & regions_coordinates()
Helper function for getting access to the regions coordinates.
bool is_boundary_refinement_allowed() const
Helper function for getting the status of boundary refinement.
bool is_internal_boundary_refinement_allowed() const
Helper function for getting the status of boundary refinement.
////////////////////////////////////////////////////////////////////// //////////////////////////////...
void triangulate(char *triswitches, struct oomph::TriangulateIO *in, struct oomph::TriangulateIO *out, struct oomph::TriangulateIO *vorout)