| actions_after_adapt() | oomph::Problem | inlinevirtual |
| actions_after_change_in_bifurcation_parameter() | oomph::Problem | inlineprotectedvirtual |
| actions_after_change_in_global_parameter(double *const ¶meter_pt) | oomph::Problem | inlineprotectedvirtual |
| actions_after_distribute() | oomph::Problem | inlineprotectedvirtual |
| actions_after_explicit_stage() | oomph::ExplicitTimeSteppableObject | inlinevirtual |
| actions_after_explicit_timestep() | oomph::Problem | inlineprotectedvirtual |
| actions_after_implicit_timestep() | oomph::Problem | inlineprotectedvirtual |
| actions_after_implicit_timestep_and_error_estimation() | oomph::Problem | inlineprotectedvirtual |
| actions_after_newton_solve() | oomph::BiharmonicProblem< DIM > | inlinevirtual |
| actions_after_newton_step() | oomph::Problem | inlineprotectedvirtual |
| actions_after_parameter_increase(double *const ¶meter_pt) | oomph::Problem | inlineprotectedvirtual |
| actions_after_read_unstructured_meshes() | oomph::Problem | inlineprotectedvirtual |
| actions_before_adapt() | oomph::Problem | inlinevirtual |
| actions_before_distribute() | oomph::Problem | inlineprotectedvirtual |
| actions_before_explicit_stage() | oomph::ExplicitTimeSteppableObject | inlinevirtual |
| actions_before_explicit_timestep() | oomph::Problem | inlineprotectedvirtual |
| actions_before_implicit_timestep() | oomph::Problem | inlineprotectedvirtual |
| actions_before_newton_convergence_check() | oomph::Problem | inlineprotectedvirtual |
| actions_before_newton_solve() | oomph::BiharmonicProblem< DIM > | inlinevirtual |
| actions_before_newton_step() | oomph::Problem | inlineprotectedvirtual |
| actions_before_read_unstructured_meshes() | oomph::Problem | inlineprotectedvirtual |
| activate_bifurcation_tracking(double *const ¶meter_pt, const DoubleVector &eigenvector, const bool &block_solve=true) | oomph::Problem | |
| activate_bifurcation_tracking(double *const ¶meter_pt, const DoubleVector &eigenvector, const DoubleVector &normalisation, const bool &block_solve=true) | oomph::Problem | |
| activate_fold_tracking(double *const ¶meter_pt, const bool &block_solve=true) | oomph::Problem | |
| activate_hopf_tracking(double *const ¶meter_pt, const bool &block_solve=true) | oomph::Problem | |
| activate_hopf_tracking(double *const ¶meter_pt, const double &omega, const DoubleVector &null_real, const DoubleVector &null_imag, const bool &block_solve=true) | oomph::Problem | |
| activate_pitchfork_tracking(double *const ¶meter_pt, const DoubleVector &symmetry_vector, const bool &block_solve=true) | oomph::Problem | |
| adapt(unsigned &n_refined, unsigned &n_unrefined) | oomph::Problem | |
| adapt() | oomph::Problem | inline |
| adapt_based_on_error_estimates(unsigned &n_refined, unsigned &n_unrefined, Vector< Vector< double >> &elemental_error) | oomph::Problem | |
| adapt_based_on_error_estimates(Vector< Vector< double >> &elemental_error) | oomph::Problem | inline |
| adaptive_unsteady_newton_solve(const double &dt_desired, const double &epsilon) | oomph::Problem | |
| adaptive_unsteady_newton_solve(const double &dt_desired, const double &epsilon, const bool &shift_values) | oomph::Problem | |
| add_eigenvector_to_dofs(const double &epsilon, const DoubleVector &eigenvector) | oomph::Problem | |
| add_global_data(Data *const &global_data_pt) | oomph::Problem | inline |
| add_sub_mesh(Mesh *const &mesh_pt) | oomph::Problem | inline |
| add_time_stepper_pt(TimeStepper *const &time_stepper_pt) | oomph::Problem | |
| add_to_dofs(const double &lambda, const DoubleVector &increment_dofs) | oomph::Problem | virtual |
| Always_take_one_newton_step | oomph::Problem | protected |
| arc_length_step_solve(double *const ¶meter_pt, const double &ds, const unsigned &max_adapt=0) | oomph::Problem | |
| arc_length_step_solve(Data *const &data_pt, const unsigned &data_index, const double &ds, const unsigned &max_adapt=0) | oomph::Problem | |
| arc_length_step_solve_helper(double *const ¶meter_pt, const double &ds, const unsigned &max_adapt) | oomph::Problem | private |
| Arc_length_step_taken | oomph::Problem | protected |
| are_hessian_products_calculated_analytically() | oomph::Problem | inline |
| Assembly_handler_pt | oomph::Problem | private |
| assembly_handler_pt() | oomph::Problem | inline |
| assembly_handler_pt() const | oomph::Problem | inline |
| Assembly_method enum name | oomph::Problem | protected |
| assign_eigenvector_to_dofs(DoubleVector &eigenvector) | oomph::Problem | |
| assign_eqn_numbers(const bool &assign_local_eqn_numbers=true) | oomph::Problem | |
| assign_initial_values_impulsive() | oomph::Problem | |
| assign_initial_values_impulsive(const double &dt) | oomph::Problem | |
| Base_mesh_element_number_plus_one | oomph::Problem | private |
| Base_mesh_element_pt | oomph::Problem | private |
| bifurcation_adapt_doc_errors(const unsigned &bifurcation_type) | oomph::Problem | private |
| bifurcation_adapt_helper(unsigned &n_refined, unsigned &n_unrefined, const unsigned &bifurcation_type, const bool &actually_adapt=true) | oomph::Problem | private |
| Bifurcation_detection | oomph::Problem | protected |
| bifurcation_parameter_pt() const | oomph::Problem | |
| BiharmonicProblem() | oomph::BiharmonicProblem< DIM > | inline |
| BiharmonicSourceFctPt typedef | oomph::BiharmonicProblem< DIM > | |
| Bisect_to_find_bifurcation | oomph::Problem | protected |
| build_bulk_mesh(const unsigned n_x, const unsigned n_y, TopologicallyRectangularDomain *domain_pt, HermiteQuadMesh< BiharmonicElement< 2 >>::MeshSpacingFnPtr spacing_fn=0) | oomph::BiharmonicProblem< DIM > | inlineprotected |
| build_global_mesh() | oomph::Problem | |
| build_global_mesh_and_assign_eqn_numbers() | oomph::BiharmonicProblem< DIM > | inlineprotected |
| build_mesh() | oomph::Problem | inlinevirtual |
| Bulk_element_mesh_pt | oomph::BiharmonicProblem< DIM > | |
| bulk_element_mesh_pt() | oomph::BiharmonicProblem< DIM > | inline |
| Bypass_increase_in_dof_check_during_pruning | oomph::Problem | protected |
| calculate_continuation_derivatives(double *const ¶meter_pt) | oomph::Problem | protected |
| calculate_continuation_derivatives(const DoubleVector &z) | oomph::Problem | protected |
| calculate_continuation_derivatives_fd(double *const ¶meter_pt) | oomph::Problem | protected |
| calculate_continuation_derivatives_fd_helper(double *const ¶meter_pt) | oomph::Problem | private |
| calculate_continuation_derivatives_helper(const DoubleVector &z) | oomph::Problem | private |
| Calculate_dparameter_analytic | oomph::Problem | protected |
| Calculate_hessian_products_analytic | oomph::Problem | protected |
| calculate_predictions() | oomph::Problem | |
| check_halo_schemes(DocInfo &doc_info) | oomph::Problem | |
| check_halo_schemes() | oomph::Problem | inline |
| clear_elemental_assembly_time() | oomph::Problem | inline |
| communicator_pt() | oomph::Problem | inline |
| communicator_pt() const | oomph::Problem | inline |
| Communicator_pt | oomph::Problem | protected |
| Continuation_direction | oomph::Problem | protected |
| Continuation_time_stepper | oomph::Problem | protectedstatic |
| copy(Problem *orig_problem_pt) | oomph::Problem | |
| copy_haloed_eqn_numbers_helper(const bool &do_halos, const bool &do_external_halos) | oomph::Problem | private |
| Copy_of_problem_pt | oomph::Problem | protected |
| create_new_linear_algebra_distribution(LinearAlgebraDistribution *&dist_pt) | oomph::Problem | |
| deactivate_bifurcation_tracking() | oomph::Problem | inline |
| debug_hook_fct(const unsigned &i) | oomph::Problem | inlinevirtual |
| Default_assembly_handler_pt | oomph::Problem | private |
| Default_eigen_solver_pt | oomph::Problem | private |
| Default_linear_solver_pt | oomph::Problem | private |
| Default_matrix_distribution enum value | oomph::Problem | |
| Default_set_initial_condition_called | oomph::Problem | private |
| delete_all_external_storage() | oomph::Problem | |
| describe_dofs(std::ostream &out= *(oomph_info.stream_pt())) const | oomph::Problem | |
| Desired_newton_iterations_ds | oomph::Problem | protected |
| Desired_proportion_of_arc_length | oomph::Problem | protected |
| DirichletBCFctPt typedef | oomph::BiharmonicProblem< DIM > | |
| disable_discontinuous_formulation() | oomph::Problem | inline |
| disable_doc_imbalance_in_parallel_assembly() | oomph::Problem | inline |
| disable_globally_convergent_newton_method() | oomph::Problem | inline |
| disable_info_in_newton_solve() | oomph::Problem | inline |
| disable_jacobian_reuse() | oomph::Problem | inline |
| disable_mass_matrix_reuse() | oomph::Problem | |
| disable_problem_distributed() | oomph::Problem | inline |
| disable_store_local_dof_pt_in_elements() | oomph::Problem | inline |
| Discontinuous_element_formulation | oomph::Problem | protected |
| Dist_problem_matrix_distribution | oomph::Problem | private |
| distribute(const Vector< unsigned > &element_partition, DocInfo &doc_info, const bool &report_stats=false) | oomph::Problem | |
| distribute(DocInfo &doc_info, const bool &report_stats=false) | oomph::Problem | |
| distribute(const Vector< unsigned > &element_partition, const bool &report_stats=false) | oomph::Problem | |
| distribute(const bool &report_stats=false) | oomph::Problem | |
| distributed() const | oomph::Problem | inline |
| distributed_problem_matrix_distribution() | oomph::Problem | inline |
| Distributed_problem_matrix_distribution enum name | oomph::Problem | |
| doc_errors(DocInfo &doc_info) | oomph::Problem | |
| doc_errors() | oomph::Problem | inline |
| Doc_imbalance_in_parallel_assembly | oomph::Problem | private |
| doc_solution(DocInfo &doc_info, FiniteElement::SteadyExactSolutionFctPt exact_soln_pt=0) | oomph::BiharmonicProblem< DIM > | |
| Doc_time_in_distribute | oomph::Problem | protected |
| does_pointer_correspond_to_problem_data(double *const ¶meter_pt) | oomph::Problem | protected |
| dof(const unsigned &i) | oomph::Problem | inline |
| dof(const unsigned &i) const | oomph::Problem | inline |
| Dof_current | oomph::Problem | protected |
| dof_current(const unsigned &i) | oomph::Problem | inlineprotected |
| Dof_current_offset | oomph::Problem | protected |
| Dof_derivative | oomph::Problem | protected |
| dof_derivative(const unsigned &i) | oomph::Problem | inlineprotected |
| Dof_derivative_offset | oomph::Problem | protected |
| dof_distribution_pt() const | oomph::Problem | inline |
| Dof_distribution_pt | oomph::Problem | protected |
| dof_pt(const unsigned &i) | oomph::Problem | inline |
| dof_pt(const unsigned &i) const | oomph::Problem | inline |
| Dof_pt | oomph::Problem | protected |
| doubly_adaptive_unsteady_newton_solve(const double &dt, const double &epsilon, const unsigned &max_adapt, const bool &first, const bool &shift=true) | oomph::Problem | inline |
| doubly_adaptive_unsteady_newton_solve(const double &dt, const double &epsilon, const unsigned &max_adapt, const unsigned &suppress_resolve_after_spatial_adapt_flag, const bool &first, const bool &shift=true) | oomph::Problem | inline |
| doubly_adaptive_unsteady_newton_solve_helper(const double &dt, const double &epsilon, const unsigned &max_adapt, const unsigned &suppress_resolve_after_spatial_adapt, const bool &first, const bool &shift=true) | oomph::Problem | private |
| Ds_current | oomph::Problem | protected |
| DTSF_max_increase | oomph::Problem | protected |
| DTSF_min_decrease | oomph::Problem | protected |
| Dummy_time_value | oomph::ExplicitTimeSteppableObject | privatestatic |
| dump(std::ofstream &dump_file) const | oomph::Problem | virtual |
| dump(const std::string &dump_file_name) const | oomph::Problem | inline |
| Eigen_solver_pt | oomph::Problem | private |
| eigen_solver_pt() | oomph::Problem | inline |
| eigen_solver_pt() const | oomph::Problem | inline |
| Element_count_per_dof | oomph::Problem | protected |
| Elemental_assembly_time | oomph::Problem | protected |
| elemental_assembly_time() | oomph::Problem | inline |
| Empty_actions_after_read_unstructured_meshes_has_been_called | oomph::Problem | private |
| Empty_actions_before_read_unstructured_meshes_has_been_called | oomph::Problem | private |
| enable_discontinuous_formulation() | oomph::Problem | inline |
| enable_doc_imbalance_in_parallel_assembly() | oomph::Problem | inline |
| enable_globally_convergent_newton_method() | oomph::Problem | inline |
| enable_info_in_newton_solve() | oomph::Problem | inline |
| enable_jacobian_reuse() | oomph::Problem | inline |
| enable_mass_matrix_reuse() | oomph::Problem | |
| enable_problem_distributed() | oomph::Problem | inline |
| enable_store_local_dof_pt_in_elements() | oomph::Problem | inline |
| explicit_time_stepper_pt() | oomph::Problem | inline |
| Explicit_time_stepper_pt | oomph::Problem | private |
| explicit_timestep(const double &dt, const bool &shift_values=true) | oomph::Problem | |
| ExplicitTimeSteppableObject() | oomph::ExplicitTimeSteppableObject | inline |
| ExplicitTimeSteppableObject(const ExplicitTimeSteppableObject &)=delete | oomph::ExplicitTimeSteppableObject | |
| Face_element_mesh_pt | oomph::BiharmonicProblem< DIM > | |
| FD_step_used_in_get_hessian_vector_products | oomph::Problem | protected |
| First_el_for_assembly | oomph::Problem | private |
| First_jacobian_sign_change | oomph::Problem | protected |
| flush_global_data() | oomph::Problem | inline |
| flush_sub_meshes() | oomph::Problem | inline |
| get_all_error_estimates(Vector< Vector< double >> &elemental_error) | oomph::Problem | |
| get_all_halo_data(std::map< unsigned, double * > &map_of_halo_data) | oomph::Problem | |
| get_bifurcation_eigenfunction(Vector< DoubleVector > &eigenfunction) | oomph::Problem | |
| get_data_to_be_sent_during_load_balancing(const Vector< unsigned > &element_domain_on_this_proc, Vector< int > &send_n, Vector< double > &send_data, Vector< int > &send_displacement, Vector< unsigned > &old_domain_for_base_element, Vector< unsigned > &new_domain_for_base_element, unsigned &max_refinement_level_overall) | oomph::Problem | private |
| get_derivative_wrt_global_parameter(double *const ¶meter_pt, DoubleVector &result) | oomph::Problem | |
| get_dofs(DoubleVector &dofs) const | oomph::Problem | virtual |
| get_dofs(const unsigned &t, DoubleVector &dofs) const | oomph::Problem | virtual |
| get_dvaluesdt(DoubleVector &f) | oomph::Problem | virtual |
| get_eigenproblem_matrices(CRDoubleMatrix &mass_matrix, CRDoubleMatrix &main_matrix, const double &shift=0.0) | oomph::Problem | virtual |
| get_fd_jacobian(DoubleVector &residuals, DenseMatrix< double > &jacobian) | oomph::Problem | |
| get_first_and_last_element_for_assembly(Vector< unsigned > &first_el_for_assembly, Vector< unsigned > &last_el_for_assembly) const | oomph::Problem | inline |
| get_flat_packed_refinement_pattern_for_load_balancing(const Vector< unsigned > &old_domain_for_base_element, const Vector< unsigned > &new_domain_for_base_element, const unsigned &max_refinement_level_overall, std::map< unsigned, Vector< unsigned >> &flat_packed_refinement_info_for_root) | oomph::Problem | private |
| get_hessian_vector_products(DoubleVectorWithHaloEntries const &Y, Vector< DoubleVectorWithHaloEntries > const &C, Vector< DoubleVectorWithHaloEntries > &product) | oomph::Problem | |
| get_inverse_mass_matrix_times_residuals(DoubleVector &Mres) | oomph::Problem | virtual |
| get_jacobian(DoubleVector &residuals, DenseDoubleMatrix &jacobian) | oomph::Problem | virtual |
| get_jacobian(DoubleVector &residuals, CRDoubleMatrix &jacobian) | oomph::Problem | virtual |
| get_jacobian(DoubleVector &residuals, CCDoubleMatrix &jacobian) | oomph::Problem | virtual |
| get_jacobian(DoubleVector &residuals, SumOfMatrices &jacobian) | oomph::Problem | inlinevirtual |
| get_my_eqns(AssemblyHandler *const &assembly_handler_pt, const unsigned &el_lo, const unsigned &el_hi, Vector< unsigned > &my_eqns) | oomph::Problem | private |
| get_residuals(DoubleVector &residuals) | oomph::Problem | virtual |
| Global_data_pt | oomph::Problem | private |
| global_data_pt(const unsigned &i) | oomph::Problem | inline |
| global_dof_pt(const unsigned &i) | oomph::Problem | inline |
| global_temporal_error_norm() | oomph::Problem | inlineprotectedvirtual |
| globally_convergent_line_search(const Vector< double > &x_old, const double &half_residual_squared_old, DoubleVector &gradient, DoubleVector &newton_dir, double &half_residual_squared, const double &stpmax) | oomph::Problem | private |
| Halo_dof_pt | oomph::Problem | protected |
| Halo_scheme_pt | oomph::Problem | protected |
| initialise_dt(const double &dt) | oomph::Problem | |
| initialise_dt(const Vector< double > &dt) | oomph::Problem | |
| is_dparameter_calculated_analytically(double *const ¶meter_pt) | oomph::Problem | inline |
| Jacobian_has_been_computed | oomph::Problem | protected |
| jacobian_reuse_is_enabled() | oomph::Problem | inline |
| Jacobian_reuse_is_enabled | oomph::Problem | protected |
| Keep_temporal_error_below_tolerance | oomph::Problem | protected |
| Last_el_plus_one_for_assembly | oomph::Problem | private |
| Linear_solver_pt | oomph::Problem | private |
| linear_solver_pt() | oomph::Problem | inline |
| linear_solver_pt() const | oomph::Problem | inline |
| load_balance() | oomph::Problem | inline |
| load_balance(const bool &report_stats) | oomph::Problem | inline |
| load_balance(DocInfo &doc_info, const bool &report_stats) | oomph::Problem | inline |
| load_balance(DocInfo &doc_info, const bool &report_stats, const Vector< unsigned > &input_target_domain_for_local_non_halo_element) | oomph::Problem | |
| make_copy() | oomph::Problem | virtual |
| Mass_matrix_has_been_computed | oomph::Problem | protected |
| mass_matrix_reuse_is_enabled() | oomph::Problem | inline |
| Mass_matrix_reuse_is_enabled | oomph::Problem | protected |
| Mass_matrix_solver_for_explicit_timestepper_pt | oomph::Problem | private |
| mass_matrix_solver_for_explicit_timestepper_pt() | oomph::Problem | inline |
| mass_matrix_solver_for_explicit_timestepper_pt() const | oomph::Problem | inline |
| max_newton_iterations() | oomph::Problem | inline |
| Max_newton_iterations | oomph::Problem | protected |
| Max_permitted_error_for_halo_check | oomph::Problem | |
| Max_res | oomph::Problem | protected |
| max_residuals() | oomph::Problem | inline |
| Max_residuals | oomph::Problem | protected |
| maximum_dt() | oomph::Problem | inline |
| Maximum_dt | oomph::Problem | protected |
| mesh_pt() | oomph::Problem | inline |
| mesh_pt() const | oomph::Problem | inline |
| mesh_pt(const unsigned &imesh) | oomph::Problem | inline |
| mesh_pt(const unsigned &imesh) const | oomph::Problem | inline |
| Mesh_pt | oomph::Problem | private |
| Minimum_ds | oomph::Problem | protected |
| Minimum_dt | oomph::Problem | protected |
| minimum_dt() | oomph::Problem | inline |
| Minimum_dt_but_still_proceed | oomph::Problem | protected |
| Must_recompute_load_balance_for_assembly | oomph::Problem | private |
| ndof() const | oomph::Problem | inline |
| newton_solve() | oomph::Problem | |
| newton_solve(unsigned const &max_adapt) | oomph::Problem | |
| newton_solve_continuation(double *const ¶meter_pt) | oomph::Problem | protected |
| newton_solve_continuation(double *const ¶meter_pt, DoubleVector &z) | oomph::Problem | protected |
| newton_solver_tolerance() | oomph::Problem | inline |
| Newton_solver_tolerance | oomph::Problem | protected |
| nglobal_data() const | oomph::Problem | inline |
| Nnewton_iter_taken | oomph::Problem | protected |
| nsub_mesh() const | oomph::Problem | inline |
| ntime_stepper() const | oomph::Problem | inline |
| Numerical_zero_for_sparse_assembly | oomph::Problem | protected |
| operator=(const Problem &)=delete | oomph::Problem | |
| oomph::ExplicitTimeSteppableObject::operator=(const ExplicitTimeSteppableObject &)=delete | oomph::ExplicitTimeSteppableObject | |
| p_adapt(unsigned &n_refined, unsigned &n_unrefined) | oomph::Problem | |
| p_adapt() | oomph::Problem | inline |
| p_refine_selected_elements(const Vector< unsigned > &elements_to_be_refined) | oomph::Problem | |
| p_refine_selected_elements(const Vector< PRefineableElement * > &elements_to_be_refined_pt) | oomph::Problem | |
| p_refine_selected_elements(const unsigned &i_mesh, const Vector< unsigned > &elements_to_be_refined) | oomph::Problem | |
| p_refine_selected_elements(const unsigned &i_mesh, const Vector< PRefineableElement * > &elements_to_be_refined_pt) | oomph::Problem | |
| p_refine_selected_elements(const Vector< Vector< unsigned >> &elements_to_be_refined) | oomph::Problem | |
| p_refine_selected_elements(const Vector< Vector< PRefineableElement * >> &elements_to_be_refined_pt) | oomph::Problem | |
| p_refine_uniformly(const Vector< unsigned > &nrefine_for_mesh) | oomph::Problem | inline |
| p_refine_uniformly(const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info) | oomph::Problem | inline |
| p_refine_uniformly(DocInfo &doc_info) | oomph::Problem | inline |
| p_refine_uniformly() | oomph::Problem | inline |
| p_refine_uniformly(const unsigned &i_mesh, DocInfo &doc_info) | oomph::Problem | |
| p_refine_uniformly(const unsigned &i_mesh) | oomph::Problem | inline |
| p_refine_uniformly_and_prune(const Vector< unsigned > &nrefine_for_mesh) | oomph::Problem | inline |
| p_refine_uniformly_and_prune(const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info) | oomph::Problem | inline |
| p_refine_uniformly_and_prune(DocInfo &doc_info) | oomph::Problem | inline |
| p_refine_uniformly_aux(const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info, const bool &prune) | oomph::Problem | private |
| p_unrefine_uniformly(DocInfo &doc_info) | oomph::Problem | |
| p_unrefine_uniformly(const unsigned &i_mesh, DocInfo &doc_info) | oomph::Problem | |
| parallel_sparse_assemble(const LinearAlgebraDistribution *const &dist_pt, Vector< int * > &column_or_row_index, Vector< int * > &row_or_column_start, Vector< double * > &value, Vector< unsigned > &nnz, Vector< double * > &residuals) | oomph::Problem | private |
| Parallel_sparse_assemble_previous_allocation | oomph::Problem | private |
| Parameter_current | oomph::Problem | protected |
| Parameter_derivative | oomph::Problem | protected |
| partition_global_mesh(Mesh *&global_mesh_pt, DocInfo &doc_info, Vector< unsigned > &element_domain, const bool &report_stats=false) | oomph::Problem | virtual |
| Pause_at_end_of_sparse_assembly | oomph::Problem | protected |
| Perform_assembly_using_lists enum value | oomph::Problem | protected |
| Perform_assembly_using_maps enum value | oomph::Problem | protected |
| Perform_assembly_using_two_arrays enum value | oomph::Problem | protected |
| Perform_assembly_using_two_vectors enum value | oomph::Problem | protected |
| Perform_assembly_using_vectors_of_pairs enum value | oomph::Problem | protected |
| Problem() | oomph::Problem | |
| Problem(const Problem &dummy)=delete | oomph::Problem | |
| Problem_has_been_distributed | oomph::Problem | protected |
| problem_has_been_distributed() | oomph::Problem | inline |
| Problem_is_nonlinear | oomph::Problem | protected |
| problem_is_nonlinear(const bool &prob_lin) | oomph::Problem | inline |
| Problem_matrix_distribution enum value | oomph::Problem | |
| prune_halo_elements_and_nodes(DocInfo &doc_info, const bool &report_stats) | oomph::Problem | |
| prune_halo_elements_and_nodes(const bool &report_stats=false) | oomph::Problem | inline |
| read(std::ifstream &restart_file, bool &unsteady_restart) | oomph::Problem | virtual |
| read(std::ifstream &restart_file) | oomph::Problem | inlinevirtual |
| rebuild_global_mesh() | oomph::Problem | |
| recompute_load_balanced_assembly() | oomph::Problem | private |
| refine_distributed_base_mesh(Vector< Vector< Vector< unsigned >>> &to_be_refined_on_each_root, const unsigned &max_level_overall) | oomph::Problem | |
| refine_selected_elements(const Vector< unsigned > &elements_to_be_refined) | oomph::Problem | |
| refine_selected_elements(const Vector< RefineableElement * > &elements_to_be_refined_pt) | oomph::Problem | |
| refine_selected_elements(const unsigned &i_mesh, const Vector< unsigned > &elements_to_be_refined) | oomph::Problem | |
| refine_selected_elements(const unsigned &i_mesh, const Vector< RefineableElement * > &elements_to_be_refined_pt) | oomph::Problem | |
| refine_selected_elements(const Vector< Vector< unsigned >> &elements_to_be_refined) | oomph::Problem | |
| refine_selected_elements(const Vector< Vector< RefineableElement * >> &elements_to_be_refined_pt) | oomph::Problem | |
| refine_uniformly(const Vector< unsigned > &nrefine_for_mesh) | oomph::Problem | inline |
| refine_uniformly(const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info) | oomph::Problem | inline |
| refine_uniformly(DocInfo &doc_info) | oomph::Problem | inline |
| refine_uniformly() | oomph::Problem | inline |
| refine_uniformly(const unsigned &i_mesh, DocInfo &doc_info) | oomph::Problem | |
| refine_uniformly(const unsigned &i_mesh) | oomph::Problem | inline |
| refine_uniformly_and_prune(const Vector< unsigned > &nrefine_for_mesh) | oomph::Problem | inline |
| refine_uniformly_and_prune(const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info) | oomph::Problem | inline |
| refine_uniformly_and_prune(DocInfo &doc_info) | oomph::Problem | inline |
| refine_uniformly_aux(const Vector< unsigned > &nrefine_for_mesh, DocInfo &doc_info, const bool &prune) | oomph::Problem | private |
| Relaxation_factor | oomph::Problem | protected |
| remove_duplicate_data(Mesh *const &mesh_pt, bool &actually_removed_some_data) | oomph::Problem | private |
| remove_null_pointers_from_external_halo_node_storage() | oomph::Problem | private |
| reset_arc_length_parameters() | oomph::Problem | inline |
| reset_assembly_handler_to_default() | oomph::Problem | |
| restore_dof_values() | oomph::Problem | |
| Saved_dof_pt | oomph::Problem | private |
| Scale_arc_length | oomph::Problem | protected |
| self_test() | oomph::Problem | |
| send_data_to_be_sent_during_load_balancing(Vector< int > &send_n, Vector< double > &send_data, Vector< int > &send_displacement) | oomph::Problem | private |
| send_refinement_info_helper(Vector< unsigned > &old_domain_for_base_element, Vector< unsigned > &new_domain_for_base_element, const unsigned &max_refinement_level_overall, std::map< unsigned, Vector< unsigned >> &refinement_info_for_root_local, Vector< Vector< Vector< unsigned >>> &refinement_info_for_root_elements) | oomph::Problem | private |
| set_analytic_dparameter(double *const ¶meter_pt) | oomph::Problem | inline |
| set_analytic_hessian_products() | oomph::Problem | inline |
| set_consistent_pinned_values_for_continuation() | oomph::Problem | protected |
| set_default_first_and_last_element_for_assembly() | oomph::Problem | |
| set_default_partition_in_load_balance() | oomph::Problem | inline |
| set_dirichlet_boundary_condition(const unsigned &b, DirichletBCFctPt u_fn=0, DirichletBCFctPt dudn_fn=0) | oomph::BiharmonicProblem< DIM > | protected |
| set_dofs(const DoubleVector &dofs) | oomph::Problem | virtual |
| set_dofs(const unsigned &t, DoubleVector &dofs) | oomph::Problem | |
| set_dofs(const unsigned &t, Vector< double * > &dof_pt) | oomph::Problem | |
| set_explicit_time_stepper_pt(ExplicitTimeStepper *const &explicit_time_stepper_pt) | oomph::Problem | |
| set_first_and_last_element_for_assembly(Vector< unsigned > &first_el_for_assembly, Vector< unsigned > &last_el_for_assembly) | oomph::Problem | inline |
| set_initial_condition() | oomph::Problem | inlineprotectedvirtual |
| set_neumann_boundary_condition(const unsigned &b, BiharmonicFluxElement< 2 >::FluxFctPt flux0_fct_pt, BiharmonicFluxElement< 2 >::FluxFctPt flux1_fct_pt=0) | oomph::BiharmonicProblem< DIM > | protected |
| set_pinned_values_to_zero() | oomph::Problem | |
| set_source_function(const BiharmonicSourceFctPt source_fct_pt) | oomph::BiharmonicProblem< DIM > | inlineprotected |
| set_timestepper_for_all_data(TimeStepper *const &time_stepper_pt, const bool &preserve_existing_data=false) | oomph::Problem | |
| setup_base_mesh_info_after_pruning() | oomph::Problem | private |
| setup_dof_halo_scheme() | oomph::Problem | protected |
| setup_element_count_per_dof() | oomph::Problem | protected |
| shift_time_values() | oomph::Problem | virtual |
| Shut_up_in_newton_solve | oomph::Problem | |
| sign_of_jacobian() | oomph::Problem | inline |
| Sign_of_jacobian | oomph::Problem | protected |
| solve_adjoint_eigenproblem(const unsigned &n_eval, Vector< std::complex< double >> &eigenvalue, Vector< DoubleVector > &eigenvector_real, Vector< DoubleVector > &eigenvector_imag, const bool &steady=true) | oomph::Problem | |
| solve_adjoint_eigenproblem(const unsigned &n_eval, Vector< std::complex< double >> &eigenvalue, const bool &steady=true) | oomph::Problem | inline |
| solve_adjoint_eigenproblem_legacy(const unsigned &n_eval, Vector< std::complex< double >> &eigenvalue, Vector< DoubleVector > &eigenvector, const bool &make_timesteppers_steady=true) | oomph::Problem | |
| solve_eigenproblem(const unsigned &n_eval, Vector< std::complex< double >> &alpha, Vector< double > &beta, Vector< DoubleVector > &eigenvector_real, Vector< DoubleVector > &eigenvector_imag, const bool &steady=true) | oomph::Problem | |
| solve_eigenproblem(const unsigned &n_eval, Vector< std::complex< double >> &eigenvalue, Vector< DoubleVector > &eigenvector_real, Vector< DoubleVector > &eigenvector_imag, const bool &steady=true) | oomph::Problem | |
| solve_eigenproblem(const unsigned &n_eval, Vector< std::complex< double >> &eigenvalue, const bool &make_timesteppers_steady=true) | oomph::Problem | inline |
| solve_eigenproblem(const unsigned &n_eval, Vector< std::complex< double >> &alpha, Vector< double > &beta, const bool &steady=true) | oomph::Problem | inline |
| solve_eigenproblem_legacy(const unsigned &n_eval, Vector< std::complex< double >> &eigenvalue, Vector< DoubleVector > &eigenvector, const bool &steady=true) | oomph::Problem | |
| solve_eigenproblem_legacy(const unsigned &n_eval, Vector< std::complex< double >> &eigenvalue, const bool &steady=true) | oomph::Problem | inline |
| sparse_assemble_row_or_column_compressed(Vector< int * > &column_or_row_index, Vector< int * > &row_or_column_start, Vector< double * > &value, Vector< unsigned > &nnz, Vector< double * > &residual, bool compressed_row_flag) | oomph::Problem | protectedvirtual |
| sparse_assemble_row_or_column_compressed_with_lists(Vector< int * > &column_or_row_index, Vector< int * > &row_or_column_start, Vector< double * > &value, Vector< unsigned > &nnz, Vector< double * > &residual, bool compressed_row_flag) | oomph::Problem | privatevirtual |
| sparse_assemble_row_or_column_compressed_with_maps(Vector< int * > &column_or_row_index, Vector< int * > &row_or_column_start, Vector< double * > &value, Vector< unsigned > &nnz, Vector< double * > &residual, bool compressed_row_flag) | oomph::Problem | privatevirtual |
| sparse_assemble_row_or_column_compressed_with_two_arrays(Vector< int * > &column_or_row_index, Vector< int * > &row_or_column_start, Vector< double * > &value, Vector< unsigned > &nnz, Vector< double * > &residual, bool compressed_row_flag) | oomph::Problem | privatevirtual |
| sparse_assemble_row_or_column_compressed_with_two_vectors(Vector< int * > &column_or_row_index, Vector< int * > &row_or_column_start, Vector< double * > &value, Vector< unsigned > &nnz, Vector< double * > &residual, bool compressed_row_flag) | oomph::Problem | privatevirtual |
| sparse_assemble_row_or_column_compressed_with_vectors_of_pairs(Vector< int * > &column_or_row_index, Vector< int * > &row_or_column_start, Vector< double * > &value, Vector< unsigned > &nnz, Vector< double * > &residual, bool compressed_row_flag) | oomph::Problem | privatevirtual |
| Sparse_assemble_with_arrays_allocation_increment | oomph::Problem | protected |
| Sparse_assemble_with_arrays_initial_allocation | oomph::Problem | protected |
| Sparse_assemble_with_arrays_previous_allocation | oomph::Problem | protected |
| Sparse_assembly_method | oomph::Problem | protected |
| SpatialErrorEstimatorFctPt typedef | oomph::Problem | |
| SpatialErrorEstimatorWithDocFctPt typedef | oomph::Problem | |
| steady_newton_solve(unsigned const &max_adapt=0) | oomph::Problem | |
| store_current_dof_values() | oomph::Problem | |
| Store_local_dof_pt_in_elements | oomph::Problem | private |
| Sub_mesh_pt | oomph::Problem | private |
| Suppress_warning_about_actions_before_read_unstructured_meshes | oomph::Problem | static |
| symmetrise_eigenfunction_for_adaptive_pitchfork_tracking() | oomph::Problem | virtual |
| synchronise_all_dofs() | oomph::Problem | |
| synchronise_dofs(const bool &do_halos, const bool &do_external_halos) | oomph::Problem | |
| synchronise_eqn_numbers(const bool &assign_local_eqn_numbers=true) | oomph::Problem | |
| Theta_squared | oomph::Problem | protected |
| time() | oomph::Problem | virtual |
| time() const | oomph::Problem | |
| time_adaptive_newton_crash_on_solve_fail() | oomph::Problem | inline |
| Time_adaptive_newton_crash_on_solve_fail | oomph::Problem | protected |
| Time_pt | oomph::Problem | private |
| time_pt() | oomph::Problem | inline |
| time_pt() const | oomph::Problem | inlinevirtual |
| time_stepper_pt() | oomph::Problem | inline |
| time_stepper_pt() const | oomph::Problem | inline |
| time_stepper_pt(const unsigned &i) | oomph::Problem | inline |
| Time_stepper_pt | oomph::Problem | private |
| Timestep_reduction_factor_after_nonconvergence | oomph::Problem | protected |
| Uniform_matrix_distribution enum value | oomph::Problem | |
| unrefine_uniformly() | oomph::Problem | |
| unrefine_uniformly(const unsigned &i_mesh) | oomph::Problem | |
| unset_analytic_dparameter(double *const ¶meter_pt) | oomph::Problem | inline |
| unset_analytic_hessian_products() | oomph::Problem | inline |
| unset_default_partition_in_load_balance() | oomph::Problem | inline |
| unsteady_newton_solve(const double &dt) | oomph::Problem | |
| unsteady_newton_solve(const double &dt, const bool &shift_values) | oomph::Problem | |
| unsteady_newton_solve(const double &dt, const unsigned &max_adapt, const bool &first, const bool &shift=true) | oomph::Problem | |
| Use_continuation_timestepper | oomph::Problem | protected |
| Use_default_partition_in_load_balance | oomph::Problem | private |
| Use_finite_differences_for_continuation_derivatives | oomph::Problem | protected |
| Use_globally_convergent_newton_method | oomph::Problem | private |
| Use_predictor_values_as_initial_guess | oomph::Problem | private |
| use_predictor_values_as_initial_guess() | oomph::Problem | inline |
| ~BiharmonicProblem() | oomph::BiharmonicProblem< DIM > | inlinevirtual |
| ~ExplicitTimeSteppableObject() | oomph::ExplicitTimeSteppableObject | inlinevirtual |
| ~Problem() | oomph::Problem | virtual |